myRT

myRT report for GCA_900485995.1_18787_5_81

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Seq: UDUE01000160.1 Shigella flexneri strain 4028STDY6275093 genome assembly, contig: ERS1017720SCcontig000160, whole genome shotgun sequence (6275 bp)
Overview 1 RT 1: 989-4124 bp Neighborhood of RT #1 [989, 4124] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 989-1738 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1064-1718 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 064-1 71 8 bp Feature: gene Location: 2134-2334 bp Feature: domain Description: Tra5 Location: 2143-2317 bp Feature: domain Description: Tra5 Location: 21 43-231 7 bp Feature: gene Location: 2347-3150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2647-3142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2647-31 42 bp Feature: gene Location: 3203-3529 bp Feature: domain Description: GIIM Note: maturase Location: 3236-3455 bp Feature: domain Description: GIIM Note: maturase Location: 3236-3455 bp Feature: gene Location: 3882-4124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDUE01000169.1 Shigella flexneri strain 4028STDY6275093 genome assembly, contig: ERS1017720SCcontig000169, whole genome shotgun sequence (5865 bp)
Overview 1 RT 1: 3215-5836 bp Neighborhood of RT #1 [3215, 5862] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3215-3700 bp Feature: domain Description: COG3547 Location: 3233-3686 bp Feature: domain Description: COG3547 Location: 32 33-3686 bp Feature: gene Location: 3796-3963 bp Feature: gene Location: 3989-5206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-4829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-482 9 bp Feature: domain Description: GIIM Note: maturase Location: 4907-5129 bp Feature: domain Description: GIIM Note: maturase Location: 4907-512 9 bp Feature: gene Location: 5217-5600 bp Feature: gene Location: 5683-5862 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5686-5836 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5686-5836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDUE01000145.1 Shigella flexneri strain 4028STDY6275093 genome assembly, contig: ERS1017720SCcontig000145, whole genome shotgun sequence (8004 bp)
Overview 1 RT 1: 979-8001 bp Neighborhood of RT #1 [979, 8001] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 979-5097 bp Feature: domain Description: ESPR Location: 982-1051 bp Feature: domain Description: ESPR Location: 982-1051 bp Feature: domain Description: Peptidase_S6 Location: 1132-3304 bp Feature: domain Description: Peptidase_S6 Location: 113 2-3 3 04 bp Feature: domain Description: autotrans_barl Location: 3868-5095 bp Feature: domain Description: autotrans_barl Location: 3 868-5095 bp Feature: gene Location: 5262-5648 bp Feature: domain Description: PHA02517 Location: 5265-5646 bp Feature: domain Description: PHA02517 Location: 5265-5646 bp Feature: gene Location: 5825-7348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6098-6830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6098-683 0 bp Feature: domain Description: GIIM Note: maturase Location: 6905-7103 bp Feature: domain Description: GIIM Note: maturase Location: 6905-7103 bp Feature: gene Location: 7642-8001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)