myRT

myRT report for GCA_900486005.1_18787_5_58

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Seq: UDVV01000140.1 Shigella flexneri strain 4028STDY6275067 genome assembly, contig: ERS1017694SCcontig000140, whole genome shotgun sequence (8585 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVV01000176.1 Shigella flexneri strain 4028STDY6275067 genome assembly, contig: ERS1017694SCcontig000176, whole genome shotgun sequence (5608 bp)
Overview 1 RT 1: 327-3462 bp Neighborhood of RT #1 [327, 3462] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 327-1076 bp Feature: domain Description: PAP2_acid_phosphatase Location: 402-1056 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 402 -1056 bp Feature: gene Location: 1472-1672 bp Feature: domain Description: Tra5 Location: 1481-1655 bp Feature: domain Description: Tra5 Location: 1481-1655 bp Feature: gene Location: 1685-2488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1985-2480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1985-2 480 bp Feature: gene Location: 2541-2867 bp Feature: domain Description: GIIM Note: maturase Location: 2574-2793 bp Feature: domain Description: GIIM Note: maturase Location: 2 574-2 793 bp Feature: gene Location: 3220-3462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDVV01000184.1 Shigella flexneri strain 4028STDY6275067 genome assembly, contig: ERS1017694SCcontig000184, whole genome shotgun sequence (5358 bp)
Overview 1 RT 1: 1-3290 bp Neighborhood of RT #1 [1, 3292] RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2357-2524 bp Feature: domain Description: PHA02517 Location: 2360-2510 bp Feature: domain Description: PHA02517 Location: 23 60-2510 bp Feature: gene Location: 2645-3292 bp Feature: domain Description: PHA02517 Location: 2648-3290 bp Feature: domain Description: PHA02517 Location: 2648-3 290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)