myRT

myRT report for GCA_900486015.1_18787_4_4

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Seq: UDTZ01000080.1 Shigella flexneri strain 4028STDY6274917 genome assembly, contig: ERS1017546SCcontig000080, whole genome shotgun sequence (18375 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA0251 7 Location: 2360-2741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 291 1 -2980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3061 -5233 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: UDTZ01000120.1 Shigella flexneri strain 4028STDY6274917 genome assembly, contig: ERS1017546SCcontig000120, whole genome shotgun sequence (10559 bp)
Overview 1 RT 1: 2-2617 bp Neighborhood of RT #1 [2, 2631] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-163 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5-137 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5-137 bp Feature: gene Location: 724-1857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 6-1480 bp Feature: domain Description: GIIM Note: maturase Location: 1558-1780 bp Feature: domain Description: GIIM Note: maturase Location: 1558-1780 bp Feature: gene Location: 1973-2119 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1985-2096 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1985-2 096 bp Feature: gene Location: 2146-2631 bp Feature: domain Description: COG3547 Location: 2164-2617 bp Feature: domain Description: COG3547 Location: 2 164-2 617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: UDTZ01000159.1 Shigella flexneri strain 4028STDY6274917 genome assembly, contig: ERS1017546SCcontig000159, whole genome shotgun sequence (6331 bp)
Overview 1 RT 1: 3085-5786 bp Neighborhood of RT #1 [3085, 5806] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 3085-3240 bp Feature: gene Location: 3266-3637 bp Feature: domain Description: GIIM Note: maturase Location: 3344-3563 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 44-3 563 bp Feature: gene Location: 3645-4448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3945-4440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 945-4440 bp Feature: gene Location: 4461-4661 bp Feature: domain Description: Tra5 Location: 4470-4644 bp Feature: domain Description: Tra5 Location: 4470-4644 bp Feature: gene Location: 5057-5806 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5132-5786 bp Feature: domain Description: PAP2_acid_phosphatase Location: 513 2-5786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)