myRT

myRT report for GCA_900486025.1_18787_5_69

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Seq: UDTV01000085.1 Shigella flexneri strain 4028STDY6275078 genome assembly, contig: ERS1017705SCcontig000085, whole genome shotgun sequence (17509 bp)
Overview 1 RT 1: 14859-17480 bp Neighborhood of RT #1 [14859, 17506] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 14859-15344 bp Feature: domain Description: COG3547 Location: 14877-15330 bp Feature: domain Description: COG3547 Location: 1 4877-1 5330 bp Feature: gene Location: 15440-15607 bp Feature: gene Location: 15633-16850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15819-16473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 581 9-1 6473 bp Feature: domain Description: GIIM Note: maturase Location: 16551-16773 bp Feature: domain Description: GIIM Note: maturase Location: 1 6551 -1 6773 bp Feature: gene Location: 16861-17244 bp Feature: gene Location: 17327-17506 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17330-17480 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 7330-1 7480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDTV01000019.1 Shigella flexneri strain 4028STDY6275078 genome assembly, contig: ERS1017705SCcontig000019, whole genome shotgun sequence (55950 bp)
Overview 1 RT 1: 49310-52767 bp Neighborhood of RT #1 [49310, 52832] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 49310-49624 bp Feature: gene Location: 49675-50121 bp Feature: domain Description: PHA02517 Location: 49678-50119 bp Feature: domain Description: PHA02 517 Location: 49678-50119 bp Feature: gene Location: 50238-51761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50511-51243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50511-512 43 bp Feature: domain Description: GIIM Note: maturase Location: 51318-51516 bp Feature: domain Description: GIIM Note: maturase Location: 51318-51516 bp Feature: gene Location: 51715-52140 bp Feature: gene Location: 52353-52832 bp Feature: domain Description: PHA02517 Location: 52413-52767 bp Feature: domain Description: PHA02 517 Location: 52 413-52 767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDTV01000172.1 Shigella flexneri strain 4028STDY6275078 genome assembly, contig: ERS1017705SCcontig000172, whole genome shotgun sequence (5792 bp)
Overview 1 RT 1: 2659-5360 bp Neighborhood of RT #1 [2659, 5380] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2659-2814 bp Feature: gene Location: 2840-3211 bp Feature: domain Description: GIIM Note: maturase Location: 2918-3137 bp Feature: domain Description: GIIM Note: maturase Location: 2918-3 13 7 bp Feature: gene Location: 3219-4022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3519-4014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 519-4014 bp Feature: gene Location: 4035-4235 bp Feature: domain Description: Tra5 Location: 4044-4218 bp Feature: domain Description: Tra5 Location: 4044-4218 bp Feature: gene Location: 4631-5380 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4706-5360 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4706-53 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)