myRT

myRT report for GCA_900486035.1_18787_5_66

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Seq: UDUA01000143.1 Shigella flexneri strain 4028STDY6275075 genome assembly, contig: ERS1017702SCcontig000143, whole genome shotgun sequence (7989 bp)
Overview 1 RT 1: 964-7986 bp Neighborhood of RT #1 [964, 7986] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 964-5082 bp Feature: domain Description: ESPR Location: 967-1036 bp Feature: domain Description: ESPR Location: 967-1 036 bp Feature: domain Description: Peptidase_S6 Location: 1117-3289 bp Feature: domain Description: Peptidase_S6 Location: 1 1 1 7-3289 bp Feature: domain Description: autotrans_barl Location: 3853-5080 bp Feature: domain Description: autotrans_barl Location: 3853-5080 bp Feature: gene Location: 5247-5633 bp Feature: domain Description: PHA02517 Location: 5250-5631 bp Feature: domain Description: PHA0251 7 Location: 5250-5631 bp Feature: gene Location: 5810-7333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083-6815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083-681 5 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: gene Location: 7627-7986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDUA01000086.1 Shigella flexneri strain 4028STDY6275075 genome assembly, contig: ERS1017702SCcontig000086, whole genome shotgun sequence (16973 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDUA01000160.1 Shigella flexneri strain 4028STDY6275075 genome assembly, contig: ERS1017702SCcontig000160, whole genome shotgun sequence (6260 bp)
Overview 1 RT 1: 974-4109 bp Neighborhood of RT #1 [974, 4109] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 974-1723 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1049-1703 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1049-1703 bp Feature: gene Location: 2119-2319 bp Feature: domain Description: Tra5 Location: 2128-2302 bp Feature: domain Description: Tra5 Location: 2128-23 02 bp Feature: gene Location: 2332-3135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2632-3127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 2-3 127 bp Feature: gene Location: 3188-3514 bp Feature: domain Description: GIIM Note: maturase Location: 3221-3440 bp Feature: domain Description: GIIM Note: maturase Location: 3 221-3 440 bp Feature: gene Location: 3867-4109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)