myRT

myRT report for GCA_900486045.1_18787_5_61

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Seq: UDUB01000171.1 Shigella flexneri strain 4028STDY6275070 genome assembly, contig: ERS1017697SCcontig000171, whole genome shotgun sequence (5648 bp)
Overview 1 RT 1: 332-3467 bp Neighborhood of RT #1 [332, 3467] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 332-1081 bp Feature: domain Description: PAP2_acid_phosphatase Location: 407-1061 bp Feature: domain Description: PAP2_acid_phosphatase Location: 407-1 061 bp Feature: gene Location: 1477-1677 bp Feature: domain Description: Tra5 Location: 1486-1660 bp Feature: domain Description: Tra5 Location: 1 486-1 660 bp Feature: gene Location: 1690-2493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990-2485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 990-2485 bp Feature: gene Location: 2546-2872 bp Feature: domain Description: GIIM Note: maturase Location: 2579-2798 bp Feature: domain Description: GIIM Note: maturase Location: 2579-2798 bp Feature: gene Location: 3225-3467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDUB01000167.1 Shigella flexneri strain 4028STDY6275070 genome assembly, contig: ERS1017697SCcontig000167, whole genome shotgun sequence (5813 bp)
Overview 1 RT 1: 3149-5476 bp Neighborhood of RT #1 [3149, 5721] PHA02517 RVT-GII GIIM Feature: gene Location: 3149-3277 bp Feature: gene Location: 3367-3606 bp Feature: domain Description: PHA02517 Location: 3370-3541 bp Feature: domain Description: PHA02 517 Location: 3370-3541 bp Feature: gene Location: 4198-5721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4471-5203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4471-52 03 bp Feature: domain Description: GIIM Note: maturase Location: 5278-5476 bp Feature: domain Description: GIIM Note: maturase Location: 52 78-5476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDUB01000162.1 Shigella flexneri strain 4028STDY6275070 genome assembly, contig: ERS1017697SCcontig000162, whole genome shotgun sequence (5963 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)