myRT

myRT report for GCA_900486055.1_18787_4_2

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Seq: UDUP01000076.1 Shigella flexneri strain 4028STDY6274915 genome assembly, contig: ERS1017544SCcontig000076, whole genome shotgun sequence (20049 bp)
Overview 1 RT 1: 156-2741 bp Neighborhood of RT #1 [156, 2755] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 156-287 bp Feature: domain Description: DDE_Tnp_IS66 Location: 168-261 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 68-261 bp Feature: gene Location: 764-1981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1 604 bp Feature: domain Description: GIIM Note: maturase Location: 1682-1904 bp Feature: domain Description: GIIM Note: maturase Location: 1 682-1 904 bp Feature: gene Location: 2097-2243 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2109-2220 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 09-2220 bp Feature: gene Location: 2270-2755 bp Feature: domain Description: COG3547 Location: 2288-2741 bp Feature: domain Description: COG3547 Location: 2288-2741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDUP01000171.1 Shigella flexneri strain 4028STDY6274915 genome assembly, contig: ERS1017544SCcontig000171, whole genome shotgun sequence (5184 bp)
Overview 1 RT 1: 1605-5014 bp Neighborhood of RT #1 [1605, 5016] PHA02517 RVT-GII GIIM PHA02517 PRK09413 Feature: gene Location: 1605-1733 bp Feature: gene Location: 1823-2062 bp Feature: domain Description: PHA02517 Location: 1826-1997 bp Feature: domain Description: PHA02 517 Location: 182 6-1997 bp Feature: gene Location: 2654-4177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2927-3659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 7-3659 bp Feature: domain Description: GIIM Note: maturase Location: 3734-3932 bp Feature: domain Description: GIIM Note: maturase Location: 3734-3932 bp Feature: gene Location: 4342-4575 bp Feature: domain Description: PHA02517 Location: 4345-4561 bp Feature: domain Description: PHA02 517 Location: 4345-4561 bp Feature: gene Location: 4651-5016 bp Feature: domain Description: PRK09413 Location: 4654-5014 bp Feature: domain Description: PRK09413 Location: 4654-5014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)