myRT

myRT report for GCA_900486075.1_18787_5_83

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Seq: UDUF01000116.1 Shigella flexneri strain 4028STDY6275095 genome assembly, contig: ERS1017722SCcontig000116, whole genome shotgun sequence (10956 bp)
Overview 1 RT 1: 7840-10953 bp Neighborhood of RT #1 [7840, 10953] PHA02517 RVT-GII GIIM Feature: gene Location: 7840-8082 bp Feature: gene Location: 8214-8660 bp Feature: domain Description: PHA02517 Location: 8217-8658 bp Feature: domain Description: PHA0251 7 Location: 821 7-8658 bp Feature: gene Location: 8777-10300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9050-9782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9050-9782 bp Feature: domain Description: GIIM Note: maturase Location: 9857-10055 bp Feature: domain Description: GIIM Note: maturase Location: 9857-1 0055 bp Feature: gene Location: 10594-10953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDUF01000173.1 Shigella flexneri strain 4028STDY6275095 genome assembly, contig: ERS1017722SCcontig000173, whole genome shotgun sequence (5729 bp)
Overview 1 RT 1: 413-3548 bp Neighborhood of RT #1 [413, 3548] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 413-1162 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 488-1142 bp Feature: gene Location: 1558-1758 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: gene Location: 1771-2574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 071-2 566 bp Feature: gene Location: 2627-2953 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: domain Description: GIIM Note: maturase Location: 2 660-2 879 bp Feature: gene Location: 3306-3548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDUF01000169.1 Shigella flexneri strain 4028STDY6275095 genome assembly, contig: ERS1017722SCcontig000169, whole genome shotgun sequence (5861 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3 547 Location: 2184-263 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)