myRT

myRT report for GCA_900486085.1_18787_5_59

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Seq: UDUD01000205.1 Shigella flexneri strain 4028STDY6275068 genome assembly, contig: ERS1017695SCcontig000205, whole genome shotgun sequence (3597 bp)
Overview 1 RT 1: 1-3213 bp Neighborhood of RT #1 [1, 3248] RVT-GII GIIM PHA02517 DDE_Tnp_ISL3 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Feature: gene Location: 2338-3018 bp Feature: domain Description: PHA02517 Location: 2377-3016 bp Feature: domain Description: PHA0251 7 Location: 2377-301 6 bp Feature: gene Location: 3021-3248 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3072-3213 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3072-321 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388)

Seq: UDUD01000175.1 Shigella flexneri strain 4028STDY6275068 genome assembly, contig: ERS1017695SCcontig000175, whole genome shotgun sequence (5636 bp)
Overview 1 RT 1: 2584-5285 bp Neighborhood of RT #1 [2584, 5305] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2584-2739 bp Feature: gene Location: 2765-3136 bp Feature: domain Description: GIIM Note: maturase Location: 2843-3062 bp Feature: domain Description: GIIM Note: maturase Location: 2 843-3062 bp Feature: gene Location: 3144-3947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444-3939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444-3939 bp Feature: gene Location: 3960-4160 bp Feature: domain Description: Tra5 Location: 3969-4143 bp Feature: domain Description: Tra5 Location: 3969-4143 bp Feature: gene Location: 4556-5305 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4631-5285 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 4631-52 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDUD01000156.1 Shigella flexneri strain 4028STDY6275068 genome assembly, contig: ERS1017695SCcontig000156, whole genome shotgun sequence (6982 bp)
Overview 1 RT 1: 4227-6880 bp Neighborhood of RT #1 [4227, 6880] COG3547 RVT-GII GIIM Feature: gene Location: 4227-4712 bp Feature: domain Description: COG3547 Location: 4245-4698 bp Feature: domain Description: COG3 547 Location: 4245-4698 bp Feature: gene Location: 4808-4975 bp Feature: gene Location: 5001-6218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187-5841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187-5841 bp Feature: domain Description: GIIM Note: maturase Location: 5919-6141 bp Feature: domain Description: GIIM Note: maturase Location: 5919-6141 bp Feature: gene Location: 6229-6612 bp Feature: gene Location: 6686-6880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)