myRT

myRT report for GCA_900486095.1_18787_5_84

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Seq: UDVE01000166.1 Shigella flexneri strain 4028STDY6275096 genome assembly, contig: ERS1017723SCcontig000166, whole genome shotgun sequence (5859 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-1 57 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1 500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1 578-1 800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-21 1 6 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 21 84-2637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVE01000108.1 Shigella flexneri strain 4028STDY6275096 genome assembly, contig: ERS1017723SCcontig000108, whole genome shotgun sequence (11653 bp)
Overview 1 RT 1: 337-8271 bp Neighborhood of RT #1 [337, 8336] PAP2_acid_phosphatase Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 337-1086 bp Feature: domain Description: PAP2_acid_phosphatase Location: 412-1066 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 412 -1066 bp Feature: gene Location: 1482-1682 bp Feature: domain Description: Tra5 Location: 1491-1665 bp Feature: domain Description: Tra5 Location: 1491-1665 bp Feature: gene Location: 1695-2498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995-2490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995-2 490 bp Feature: gene Location: 2551-2877 bp Feature: domain Description: GIIM Note: maturase Location: 2584-2803 bp Feature: domain Description: GIIM Note: maturase Location: 2 584-2 803 bp Feature: gene Location: 3230-3472 bp Feature: gene Location: 3384-5036 bp Feature: domain Description: ushA Location: 3396-5034 bp Feature: domain Description: ushA Location: 3396-5034 bp Feature: gene Location: 5377-5823 bp Feature: domain Description: PHA02517 Location: 5380-5821 bp Feature: domain Description: PHA02 517 Location: 5380-582 1 bp Feature: gene Location: 5940-7463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6213-6945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 13-6945 bp Feature: domain Description: GIIM Note: maturase Location: 7020-7218 bp Feature: domain Description: GIIM Note: maturase Location: 702 0-72 18 bp Feature: gene Location: 7417-7842 bp Feature: gene Location: 8055-8336 bp Feature: domain Description: PHA02517 Location: 8061-8271 bp Feature: domain Description: PHA02 517 Location: 8061-82 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)