myRT

myRT report for GCA_900486105.1_18787_5_60

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Seq: UDUI01000157.1 Shigella flexneri strain 4028STDY6275069 genome assembly, contig: ERS1017696SCcontig000157, whole genome shotgun sequence (6300 bp)
Overview 1 RT 1: 982-4117 bp Neighborhood of RT #1 [982, 4117] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 982-1731 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1057-1711 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 057-1 71 1 bp Feature: gene Location: 2127-2327 bp Feature: domain Description: Tra5 Location: 2136-2310 bp Feature: domain Description: Tra5 Location: 21 36-231 0 bp Feature: gene Location: 2340-3143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2640-3135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2640-31 35 bp Feature: gene Location: 3196-3522 bp Feature: domain Description: GIIM Note: maturase Location: 3229-3448 bp Feature: domain Description: GIIM Note: maturase Location: 3229-3448 bp Feature: gene Location: 3875-4117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDUI01000087.1 Shigella flexneri strain 4028STDY6275069 genome assembly, contig: ERS1017696SCcontig000087, whole genome shotgun sequence (16912 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 005-2 116 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 2 184-2 637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDUI01000142.1 Shigella flexneri strain 4028STDY6275069 genome assembly, contig: ERS1017696SCcontig000142, whole genome shotgun sequence (7989 bp)
Overview 1 RT 1: 964-7986 bp Neighborhood of RT #1 [964, 7986] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 964-5082 bp Feature: domain Description: ESPR Location: 967-1036 bp Feature: domain Description: ESPR Location: 967-103 6 bp Feature: domain Description: Peptidase_S6 Location: 1117-3289 bp Feature: domain Description: Peptidase_S6 Location: 1117-3 289 bp Feature: domain Description: autotrans_barl Location: 3853-5080 bp Feature: domain Description: autotrans_barl Location: 3 853 -5080 bp Feature: gene Location: 5247-5633 bp Feature: domain Description: PHA02517 Location: 5250-5631 bp Feature: domain Description: PHA02517 Location: 5250-563 1 bp Feature: gene Location: 5810-7333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083-6815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083 -6815 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: gene Location: 7627-7986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)