myRT

myRT report for GCA_900486115.1_18787_4_22

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Seq: UDUJ01000023.1 Shigella flexneri strain 4028STDY6274935 genome assembly, contig: ERS1017564SCcontig000023, whole genome shotgun sequence (54800 bp)
Overview 1 RT 1: 45729-52906 bp Neighborhood of RT #1 [45729, 52971] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 45729-49847 bp Feature: domain Description: ESPR Location: 45732-45801 bp Feature: domain Description: ESPR Location: 45732-45801 bp Feature: domain Description: Peptidase_S6 Location: 45882-48054 bp Feature: domain Description: Peptidase_S6 Location: 45882-48054 bp Feature: domain Description: autotrans_barl Location: 48618-49845 bp Feature: domain Description: autotrans_barl Location: 4861 8-49845 bp Feature: gene Location: 50012-50398 bp Feature: domain Description: PHA02517 Location: 50015-50396 bp Feature: domain Description: PHA0251 7 Location: 5001 5-50396 bp Feature: gene Location: 50575-52098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50848-51580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50848-51 580 bp Feature: domain Description: GIIM Note: maturase Location: 51655-51853 bp Feature: domain Description: GIIM Note: maturase Location: 51 655-51 853 bp Feature: gene Location: 52052-52477 bp Feature: gene Location: 52690-52971 bp Feature: domain Description: PHA02517 Location: 52696-52906 bp Feature: domain Description: PHA0251 7 Location: 52696-52906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDUJ01000179.1 Shigella flexneri strain 4028STDY6274935 genome assembly, contig: ERS1017564SCcontig000179, whole genome shotgun sequence (4167 bp)
Overview 1 RT 1: 2-1986 bp Neighborhood of RT #1 [2, 1986] Tra5 RVT-GII GIIM Feature: gene Location: 2-196 bp Feature: domain Description: Tra5 Location: 11-179 bp Feature: domain Description: Tra5 Location: 11-179 bp Feature: gene Location: 209-1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1004 bp Feature: gene Location: 1065-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1317 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1317 bp Feature: gene Location: 1744-1986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)

Seq: UDUJ01000101.1 Shigella flexneri strain 4028STDY6274935 genome assembly, contig: ERS1017564SCcontig000101, whole genome shotgun sequence (12642 bp)
Overview 1 RT 1: 9887-12540 bp Neighborhood of RT #1 [9887, 12540] COG3547 RVT-GII GIIM Feature: gene Location: 9887-10372 bp Feature: domain Description: COG3547 Location: 9905-10358 bp Feature: domain Description: COG3 547 Location: 9905-103 58 bp Feature: gene Location: 10468-10635 bp Feature: gene Location: 10661-11878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10847-11501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10847-11501 bp Feature: domain Description: GIIM Note: maturase Location: 11579-11801 bp Feature: domain Description: GIIM Note: maturase Location: 11579-11801 bp Feature: gene Location: 11889-12272 bp Feature: gene Location: 12346-12540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )