myRT

myRT report for GCA_900486135.1_18787_5_46

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Seq: UDUU01000082.1 Shigella flexneri strain 4028STDY6275055 genome assembly, contig: ERS1017682SCcontig000082, whole genome shotgun sequence (16993 bp)
Overview 1 RT 1: 157-2743 bp Neighborhood of RT #1 [157, 2757] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 766-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1 606 bp Feature: domain Description: GIIM Note: maturase Location: 1684-1906 bp Feature: domain Description: GIIM Note: maturase Location: 1 684-1 906 bp Feature: gene Location: 2099-2245 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2111-2222 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 1 -2222 bp Feature: gene Location: 2272-2757 bp Feature: domain Description: COG3547 Location: 2290-2743 bp Feature: domain Description: COG3547 Location: 2290-2743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDUU01000006.1 Shigella flexneri strain 4028STDY6275055 genome assembly, contig: ERS1017682SCcontig000006, whole genome shotgun sequence (78296 bp)
Overview 1 RT 1: 29254-34578 bp Neighborhood of RT #1 [29254, 34694] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 29254-30405 bp Feature: domain Description: HTH_38 Location: 29263-29377 bp Feature: domain Description: HTH_38 Location: 2 92 63-2 9377 bp Feature: domain Description: Tra8 Location: 29413-30394 bp Feature: domain Description: Tra8 Location: 2 9413-30394 bp Feature: gene Location: 30536-30961 bp Feature: domain Description: PHA02517 Location: 30560-30896 bp Feature: domain Description: PHA02 517 Location: 30560-30896 bp Feature: gene Location: 31553-33076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31826-32558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3182 6-32 558 bp Feature: domain Description: GIIM Note: maturase Location: 32633-32831 bp Feature: domain Description: GIIM Note: maturase Location: 32 633-32 831 bp Feature: gene Location: 33241-33399 bp Feature: domain Description: PHA02517 Location: 33244-33352 bp Feature: domain Description: PHA02 517 Location: 332 44-33352 bp Feature: gene Location: 33618-34694 bp Feature: domain Description: COG3547 Location: 33657-34578 bp Feature: domain Description: COG3547 Location: 33657-34578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: UDUU01000175.1 Shigella flexneri strain 4028STDY6275055 genome assembly, contig: ERS1017682SCcontig000175, whole genome shotgun sequence (4044 bp)
Overview 1 RT 1: 1733-3883 bp Neighborhood of RT #1 [1733, 3969] PAP2_acid_phosphatase Tra5 RVT-GII Feature: gene Location: 1733-2482 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1808-2462 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1808-2462 bp Feature: gene Location: 2878-3078 bp Feature: domain Description: Tra5 Location: 2887-3061 bp Feature: domain Description: Tra5 Location: 2887-3 061 bp Feature: gene Location: 3091-3969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3391-3883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 91-3 883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII