myRT

myRT report for GCA_900486145.1_18787_4_62

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Seq: UDUQ01000084.1 Shigella flexneri strain 4028STDY6274975 genome assembly, contig: ERS1017613SCcontig000084, whole genome shotgun sequence (17014 bp)
Overview 1 RT 1: 154-2739 bp Neighborhood of RT #1 [154, 2753] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 154-285 bp Feature: domain Description: DDE_Tnp_IS66 Location: 166-259 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 66-259 bp Feature: gene Location: 762-1979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1 602 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1 680-1 902 bp Feature: gene Location: 2095-2241 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2107-2218 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 07-221 8 bp Feature: gene Location: 2268-2753 bp Feature: domain Description: COG3547 Location: 2286-2739 bp Feature: domain Description: COG3547 Location: 2286-2739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDUQ01000011.1 Shigella flexneri strain 4028STDY6274975 genome assembly, contig: ERS1017613SCcontig000011, whole genome shotgun sequence (66575 bp)
Overview 1 RT 1: 13153-20867 bp Neighborhood of RT #1 [13153, 20869] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 13153-13455 bp Feature: domain Description: InsE Location: 13162-13444 bp Feature: domain Description: InsE Location: 13162 -13444 bp Feature: gene Location: 13482-13883 bp Feature: domain Description: PHA02517 Location: 13506-13848 bp Feature: domain Description: PHA02 517 Location: 13506-13848 bp Feature: gene Location: 14500-16023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14773-15505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14773-15505 bp Feature: domain Description: GIIM Note: maturase Location: 15580-15778 bp Feature: domain Description: GIIM Note: maturase Location: 15580-15778 bp Feature: gene Location: 16200-16586 bp Feature: domain Description: PHA02517 Location: 16203-16584 bp Feature: domain Description: PHA02 517 Location: 162 03-16584 bp Feature: gene Location: 16751-20869 bp Feature: domain Description: ESPR Location: 16754-16823 bp Feature: domain Description: ESPR Location: 16754-1682 3 bp Feature: domain Description: Peptidase_S6 Location: 16904-19076 bp Feature: domain Description: Peptidase_S6 Location: 16904-19076 bp Feature: domain Description: autotrans_barl Location: 19640-20867 bp Feature: domain Description: autotrans_barl Location: 19640-2 0867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDUQ01000183.1 Shigella flexneri strain 4028STDY6274975 genome assembly, contig: ERS1017613SCcontig000183, whole genome shotgun sequence (4845 bp)
Overview 1 RT 1: 134-2642 bp Neighborhood of RT #1 [134, 2642] Tra5 RVT-GII GIIM Feature: gene Location: 134-313 bp Feature: gene Location: 709-909 bp Feature: domain Description: Tra5 Location: 718-892 bp Feature: domain Description: Tra5 Location: 718-892 bp Feature: gene Location: 922-1725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1717 bp Feature: gene Location: 1778-2104 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2030 bp Feature: domain Description: GIIM Note: maturase Location: 1811-203 0 bp Feature: gene Location: 2457-2642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII