myRT

myRT report for GCA_900486155.1_18787_5_35

Download annotations/find similar RTs

Seq: UIPJ01000156.1 Shigella flexneri strain 4028STDY6275044 genome assembly, contig: ERS1017664SCcontig000156, whole genome shotgun sequence (6891 bp)
Overview 1 RT 1: 4241-6862 bp Neighborhood of RT #1 [4241, 6888] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4241-4726 bp Feature: domain Description: COG3547 Location: 4259-4712 bp Feature: domain Description: COG3547 Location: 4259-471 2 bp Feature: gene Location: 4822-4989 bp Feature: gene Location: 5015-6232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5201-5855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5201 -5855 bp Feature: domain Description: GIIM Note: maturase Location: 5933-6155 bp Feature: domain Description: GIIM Note: maturase Location: 5933-61 55 bp Feature: gene Location: 6243-6626 bp Feature: gene Location: 6709-6888 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6712-6862 bp Feature: domain Description: DDE_Tnp_IS66 Location: 671 2-6862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UIPJ01000159.1 Shigella flexneri strain 4028STDY6275044 genome assembly, contig: ERS1017664SCcontig000159, whole genome shotgun sequence (6474 bp)
Overview 1 RT 1: 1204-4339 bp Neighborhood of RT #1 [1204, 4339] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1204-1953 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1279-1933 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 12 79-1933 bp Feature: gene Location: 2349-2549 bp Feature: domain Description: Tra5 Location: 2358-2532 bp Feature: domain Description: Tra5 Location: 2 358-2 532 bp Feature: gene Location: 2562-3365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2862-3357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 862 -3357 bp Feature: gene Location: 3418-3744 bp Feature: domain Description: GIIM Note: maturase Location: 3451-3670 bp Feature: domain Description: GIIM Note: maturase Location: 3451-3670 bp Feature: gene Location: 4097-4339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UIPJ01000147.1 Shigella flexneri strain 4028STDY6275044 genome assembly, contig: ERS1017664SCcontig000147, whole genome shotgun sequence (7983 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02517 Location: 23 60-2741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3 061-523 3 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)