myRT

myRT report for GCA_900486175.1_18787_5_72

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Seq: UDUO01000156.1 Shigella flexneri strain 4028STDY6275081 genome assembly, contig: ERS1017708SCcontig000156, whole genome shotgun sequence (6565 bp)
Overview 1 RT 1: 1186-4321 bp Neighborhood of RT #1 [1186, 4321] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1186-1935 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1261-1915 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 261 -1 91 5 bp Feature: gene Location: 2331-2531 bp Feature: domain Description: Tra5 Location: 2340-2514 bp Feature: domain Description: Tra5 Location: 2340-251 4 bp Feature: gene Location: 2544-3347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2844-3339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2844-3339 bp Feature: gene Location: 3400-3726 bp Feature: domain Description: GIIM Note: maturase Location: 3433-3652 bp Feature: domain Description: GIIM Note: maturase Location: 3433-3652 bp Feature: gene Location: 4079-4321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UDUO01000143.1 Shigella flexneri strain 4028STDY6275081 genome assembly, contig: ERS1017708SCcontig000143, whole genome shotgun sequence (7995 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02 517 Location: 2 360-2 741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 2 911-2 980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3061-52 33 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-702 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: UDUO01000151.1 Shigella flexneri strain 4028STDY6275081 genome assembly, contig: ERS1017708SCcontig000151, whole genome shotgun sequence (7103 bp)
Overview 1 RT 1: 4348-7001 bp Neighborhood of RT #1 [4348, 7001] COG3547 RVT-GII GIIM Feature: gene Location: 4348-4833 bp Feature: domain Description: COG3547 Location: 4366-4819 bp Feature: domain Description: COG3 547 Location: 43 66-4819 bp Feature: gene Location: 4929-5096 bp Feature: gene Location: 5122-6339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5308-5962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 08-5962 bp Feature: domain Description: GIIM Note: maturase Location: 6040-6262 bp Feature: domain Description: GIIM Note: maturase Location: 6040-6262 bp Feature: gene Location: 6350-6733 bp Feature: gene Location: 6807-7001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)