myRT

myRT report for GCA_900486185.1_18787_4_17

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Seq: UDUZ01000144.1 Shigella flexneri strain 4028STDY6274930 genome assembly, contig: ERS1017559SCcontig000144, whole genome shotgun sequence (6893 bp)
Overview 1 RT 1: 4243-6864 bp Neighborhood of RT #1 [4243, 6890] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4243-4728 bp Feature: domain Description: COG3547 Location: 4261-4714 bp Feature: domain Description: COG3547 Location: 4261 -471 4 bp Feature: gene Location: 4824-4991 bp Feature: gene Location: 5017-6234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5203-5857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5203-5857 bp Feature: domain Description: GIIM Note: maturase Location: 5935-6157 bp Feature: domain Description: GIIM Note: maturase Location: 5935-61 57 bp Feature: gene Location: 6245-6628 bp Feature: gene Location: 6711-6890 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6714-6864 bp Feature: domain Description: DDE_Tnp_IS66 Location: 671 4-6864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDUZ01000009.1 Shigella flexneri strain 4028STDY6274930 genome assembly, contig: ERS1017559SCcontig000009, whole genome shotgun sequence (71031 bp)
Overview 1 RT 1: 54675-57532 bp Neighborhood of RT #1 [54675, 57597] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 54675-54881 bp Feature: domain Description: PHA02517 Location: 54678-54879 bp Feature: domain Description: PHA02 517 Location: 54678-54879 bp Feature: gene Location: 55002-55130 bp Feature: gene Location: 55243-56766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55516-56248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55516-562 48 bp Feature: domain Description: GIIM Note: maturase Location: 56323-56521 bp Feature: domain Description: GIIM Note: maturase Location: 5632 3-5652 1 bp Feature: gene Location: 56720-57145 bp Feature: gene Location: 57358-57597 bp Feature: domain Description: PHA02517 Location: 57361-57532 bp Feature: domain Description: PHA02 517 Location: 57361-57532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDUZ01000156.1 Shigella flexneri strain 4028STDY6274930 genome assembly, contig: ERS1017559SCcontig000156, whole genome shotgun sequence (5959 bp)
Overview 1 RT 1: 2-1986 bp Neighborhood of RT #1 [2, 1986] Tra5 RVT-GII GIIM Feature: gene Location: 2-196 bp Feature: domain Description: Tra5 Location: 11-179 bp Feature: domain Description: Tra5 Location: 11-179 bp Feature: gene Location: 209-1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1004 bp Feature: gene Location: 1065-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1317 bp Feature: domain Description: GIIM Note: maturase Location: 1098-13 17 bp Feature: gene Location: 1744-1986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)