myRT

myRT report for GCA_900486205.1_18787_4_5

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Seq: UDVH01000082.1 Shigella flexneri strain 4028STDY6274918 genome assembly, contig: ERS1017547SCcontig000082, whole genome shotgun sequence (17614 bp)
Overview 1 RT 1: 14859-17512 bp Neighborhood of RT #1 [14859, 17512] COG3547 RVT-GII GIIM Feature: gene Location: 14859-15344 bp Feature: domain Description: COG3547 Location: 14877-15330 bp Feature: domain Description: COG3547 Location: 1 4877-1 5330 bp Feature: gene Location: 15440-15607 bp Feature: gene Location: 15633-16850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15819-16473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 581 9-1 6473 bp Feature: domain Description: GIIM Note: maturase Location: 16551-16773 bp Feature: domain Description: GIIM Note: maturase Location: 1 6551 -1 6773 bp Feature: gene Location: 16861-17244 bp Feature: gene Location: 17318-17512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVH01000189.1 Shigella flexneri strain 4028STDY6274918 genome assembly, contig: ERS1017547SCcontig000189, whole genome shotgun sequence (4272 bp)
Overview 1 RT 1: 1608-3935 bp Neighborhood of RT #1 [1608, 4180] PHA02517 RVT-GII GIIM Feature: gene Location: 1608-1736 bp Feature: gene Location: 1826-2065 bp Feature: domain Description: PHA02517 Location: 1829-2000 bp Feature: domain Description: PHA02 517 Location: 182 9-2 000 bp Feature: gene Location: 2657-4180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930-3662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 930-3662 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDVH01000162.1 Shigella flexneri strain 4028STDY6274918 genome assembly, contig: ERS1017547SCcontig000162, whole genome shotgun sequence (5907 bp)
Overview 1 RT 1: 528-3663 bp Neighborhood of RT #1 [528, 3663] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 528-1277 bp Feature: domain Description: PAP2_acid_phosphatase Location: 603-1257 bp Feature: domain Description: PAP2_acid_phosphatase Location: 603 -1257 bp Feature: gene Location: 1673-1873 bp Feature: domain Description: Tra5 Location: 1682-1856 bp Feature: domain Description: Tra5 Location: 1682-1856 bp Feature: gene Location: 1886-2689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2186-2681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2186-2681 bp Feature: gene Location: 2742-3068 bp Feature: domain Description: GIIM Note: maturase Location: 2775-2994 bp Feature: domain Description: GIIM Note: maturase Location: 2775-2994 bp Feature: gene Location: 3421-3663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)