myRT

myRT report for GCA_900486215.1_18787_4_13

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Seq: UDUS01000083.1 Shigella flexneri strain 4028STDY6274926 genome assembly, contig: ERS1017555SCcontig000083, whole genome shotgun sequence (17720 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-1 57 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1 500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1 578-1 800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-21 1 6 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 21 84-2637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDUS01000018.1 Shigella flexneri strain 4028STDY6274926 genome assembly, contig: ERS1017555SCcontig000018, whole genome shotgun sequence (56363 bp)
Overview 1 RT 1: 3239-10655 bp Neighborhood of RT #1 [3239, 10657] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3239-3367 bp Feature: gene Location: 3457-3696 bp Feature: domain Description: PHA02517 Location: 3460-3631 bp Feature: domain Description: PHA02 517 Location: 3460-3631 bp Feature: gene Location: 4288-5811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-52 93 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: gene Location: 5988-6374 bp Feature: domain Description: PHA02517 Location: 5991-6372 bp Feature: domain Description: PHA02 517 Location: 5991-6372 bp Feature: gene Location: 6539-10657 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: ESPR Location: 6542 -6611 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: Peptidase_S6 Location: 6692 -8864 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Feature: domain Description: autotrans_barl Location: 942 8-10655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDUS01000161.1 Shigella flexneri strain 4028STDY6274926 genome assembly, contig: ERS1017555SCcontig000161, whole genome shotgun sequence (6287 bp)
Overview 1 RT 1: 971-4106 bp Neighborhood of RT #1 [971, 4106] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 971-1720 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1046-1700 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1046-1700 bp Feature: gene Location: 2116-2316 bp Feature: domain Description: Tra5 Location: 2125-2299 bp Feature: domain Description: Tra5 Location: 2125-2299 bp Feature: gene Location: 2329-3132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629-3124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629-3 124 bp Feature: gene Location: 3185-3511 bp Feature: domain Description: GIIM Note: maturase Location: 3218-3437 bp Feature: domain Description: GIIM Note: maturase Location: 3 218-3 43 7 bp Feature: gene Location: 3864-4106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)