myRT

myRT report for GCA_900486225.1_18787_4_9

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Seq: UIPG01000231.1 Shigella flexneri strain 4028STDY6274922 genome assembly, contig: ERS1017551SCcontig000231, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: UIPG01000167.1 Shigella flexneri strain 4028STDY6274922 genome assembly, contig: ERS1017551SCcontig000167, whole genome shotgun sequence (5729 bp)
Overview 1 RT 1: 2596-5297 bp Neighborhood of RT #1 [2596, 5317] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2596-2751 bp Feature: gene Location: 2777-3148 bp Feature: domain Description: GIIM Note: maturase Location: 2855-3074 bp Feature: domain Description: GIIM Note: maturase Location: 2 855-3074 bp Feature: gene Location: 3156-3959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3456-3951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3456-3951 bp Feature: gene Location: 3972-4172 bp Feature: domain Description: Tra5 Location: 3981-4155 bp Feature: domain Description: Tra5 Location: 3981-4155 bp Feature: gene Location: 4568-5317 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4643-5297 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 4643-52 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UIPG01000163.1 Shigella flexneri strain 4028STDY6274922 genome assembly, contig: ERS1017551SCcontig000163, whole genome shotgun sequence (5862 bp)
Overview 1 RT 1: 3212-5833 bp Neighborhood of RT #1 [3212, 5859] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3212-3697 bp Feature: domain Description: COG3547 Location: 3230-3683 bp Feature: domain Description: COG3 547 Location: 3 23 0-3 683 bp Feature: gene Location: 3793-3960 bp Feature: gene Location: 3986-5203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172-4826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172-4826 bp Feature: domain Description: GIIM Note: maturase Location: 4904-5126 bp Feature: domain Description: GIIM Note: maturase Location: 4904-5126 bp Feature: gene Location: 5214-5597 bp Feature: gene Location: 5680-5859 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683-5833 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683 -583 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)