myRT

myRT report for GCA_900486245.1_18787_4_10

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Seq: UDUV01000008.1 Shigella flexneri strain 4028STDY6274923 genome assembly, contig: ERS1017552SCcontig000008, whole genome shotgun sequence (67874 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDUV01000031.1 Shigella flexneri strain 4028STDY6274923 genome assembly, contig: ERS1017552SCcontig000031, whole genome shotgun sequence (42442 bp)
Overview 1 RT 1: 1260-5319 bp Neighborhood of RT #1 [1260, 5342] InsE PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 1260-1586 bp Feature: domain Description: InsE Location: 1263-1584 bp Feature: domain Description: InsE Location: 12 63-1584 bp Feature: gene Location: 1784-2065 bp Feature: domain Description: PHA02517 Location: 1790-2000 bp Feature: domain Description: PHA02 517 Location: 1790-2 000 bp Feature: gene Location: 2657-4180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930-3662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 930-3662 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: gene Location: 4297-4866 bp Feature: domain Description: PHA02517 Location: 4300-4705 bp Feature: domain Description: PHA02 517 Location: 4300-4705 bp Feature: gene Location: 4983-5342 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4992-5187 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4992 -5187 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5211-5319 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 52 11-5319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: UDUV01000167.1 Shigella flexneri strain 4028STDY6274923 genome assembly, contig: ERS1017552SCcontig000167, whole genome shotgun sequence (5694 bp)
Overview 1 RT 1: 2561-5262 bp Neighborhood of RT #1 [2561, 5282] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2561-2716 bp Feature: gene Location: 2742-3113 bp Feature: domain Description: GIIM Note: maturase Location: 2820-3039 bp Feature: domain Description: GIIM Note: maturase Location: 2820-3 03 9 bp Feature: gene Location: 3121-3924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3421-3916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 421-3 916 bp Feature: gene Location: 3937-4137 bp Feature: domain Description: Tra5 Location: 3946-4120 bp Feature: domain Description: Tra5 Location: 3 946-4120 bp Feature: gene Location: 4533-5282 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4608-5262 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4608-5262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)