myRT

myRT report for GCA_900486255.1_18787_4_19

Download annotations/find similar RTs

Seq: UDVR01000145.1 Shigella flexneri strain 4028STDY6274932 genome assembly, contig: ERS1017561SCcontig000145, whole genome shotgun sequence (8195 bp)
Overview 1 RT 1: 413-8192 bp Neighborhood of RT #1 [413, 8192] PAP2_acid_phosphatase Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM Feature: gene Location: 413-1162 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1 1 42 bp Feature: gene Location: 1558-1758 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: domain Description: Tra5 Location: 1 567-1 741 bp Feature: gene Location: 1771-2574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071 -2566 bp Feature: gene Location: 2627-2953 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: gene Location: 3306-3548 bp Feature: gene Location: 3460-5112 bp Feature: domain Description: ushA Location: 3472-5110 bp Feature: domain Description: ushA Location: 3472-51 1 0 bp Feature: gene Location: 5453-5899 bp Feature: domain Description: PHA02517 Location: 5456-5897 bp Feature: domain Description: PHA0251 7 Location: 5456-5897 bp Feature: gene Location: 6016-7539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6289-7021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6289-7021 bp Feature: domain Description: GIIM Note: maturase Location: 7096-7294 bp Feature: domain Description: GIIM Note: maturase Location: 7096-7294 bp Feature: gene Location: 7833-8192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)

Seq: UDVR01000168.1 Shigella flexneri strain 4028STDY6274932 genome assembly, contig: ERS1017561SCcontig000168, whole genome shotgun sequence (5958 bp)
Overview 1 RT 1: 3203-5856 bp Neighborhood of RT #1 [3203, 5856] COG3547 RVT-GII GIIM Feature: gene Location: 3203-3688 bp Feature: domain Description: COG3547 Location: 3221-3674 bp Feature: domain Description: COG3547 Location: 32 2 1-3674 bp Feature: gene Location: 3784-3951 bp Feature: gene Location: 3977-5194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4163-4817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4163-4817 bp Feature: domain Description: GIIM Note: maturase Location: 4895-5117 bp Feature: domain Description: GIIM Note: maturase Location: 4895-5117 bp Feature: gene Location: 5205-5588 bp Feature: gene Location: 5662-5856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)