myRT

myRT report for GCA_900486265.1_18787_4_6

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Seq: UDUW01000122.1 Shigella flexneri strain 4028STDY6274919 genome assembly, contig: ERS1017548SCcontig000122, whole genome shotgun sequence (10218 bp)
Overview 1 RT 1: 1631-9786 bp Neighborhood of RT #1 [1631, 9806] PHA02517 RVT-GII GIIM PHA02517 ushA GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 1631-1759 bp Feature: gene Location: 1849-2088 bp Feature: domain Description: PHA02517 Location: 1852-2023 bp Feature: domain Description: PHA0251 7 Location: 1 852-2023 bp Feature: gene Location: 2680-4203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2953-3685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2953-3685 bp Feature: domain Description: GIIM Note: maturase Location: 3760-3958 bp Feature: domain Description: GIIM Note: maturase Location: 3760-3958 bp Feature: gene Location: 4380-4766 bp Feature: domain Description: PHA02517 Location: 4383-4764 bp Feature: domain Description: PHA0251 7 Location: 4383-4764 bp Feature: gene Location: 5107-6759 bp Feature: domain Description: ushA Location: 5119-6757 bp Feature: domain Description: ushA Location: 51 1 9-6757 bp Feature: gene Location: 7085-7240 bp Feature: gene Location: 7266-7637 bp Feature: domain Description: GIIM Note: maturase Location: 7344-7563 bp Feature: domain Description: GIIM Note: maturase Location: 7344-7563 bp Feature: gene Location: 7645-8448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7945-8440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7945-8440 bp Feature: gene Location: 8461-8661 bp Feature: domain Description: Tra5 Location: 8470-8644 bp Feature: domain Description: Tra5 Location: 8470-8644 bp Feature: gene Location: 9057-9806 bp Feature: domain Description: PAP2_acid_phosphatase Location: 9132-9786 bp Feature: domain Description: PAP2_acid_phosphatase Location: 91 32-9786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ushA (PRK09558), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDUW01000163.1 Shigella flexneri strain 4028STDY6274919 genome assembly, contig: ERS1017548SCcontig000163, whole genome shotgun sequence (5962 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)