myRT

myRT report for GCA_900486275.1_18787_4_11

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Seq: UDVF01000629.1 Shigella flexneri strain 4028STDY6274924 genome assembly, contig: ERS1017553SCcontig000629, whole genome shotgun sequence (802 bp)
Overview 1 RT 1: 1-760 bp Neighborhood of RT #1 [1, 801] RVT-GII GIIM Feature: gene Location: 1-801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-487 bp Feature: domain Description: GIIM Note: maturase Location: 562-760 bp Feature: domain Description: GIIM Note: maturase Location: 562-760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: UDVF01000243.1 Shigella flexneri strain 4028STDY6274924 genome assembly, contig: ERS1017553SCcontig000243, whole genome shotgun sequence (5688 bp)
Overview 1 RT 1: 1-2638 bp Neighborhood of RT #1 [1, 2652] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 661-1878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 847-1501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 847-1501 bp Feature: domain Description: GIIM Note: maturase Location: 1579-1801 bp Feature: domain Description: GIIM Note: maturase Location: 1579-1801 bp Feature: gene Location: 1994-2140 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2006-2117 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 006-2 117 bp Feature: gene Location: 2167-2652 bp Feature: domain Description: COG3547 Location: 2185-2638 bp Feature: domain Description: COG3547 Location: 2 185-2 638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVF01000095.1 Shigella flexneri strain 4028STDY6274924 genome assembly, contig: ERS1017553SCcontig000095, whole genome shotgun sequence (12877 bp)
Overview 1 RT 1: 4299-9889 bp Neighborhood of RT #1 [4299, 9891] Tra5 Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 4299-4499 bp Feature: domain Description: Tra5 Location: 4308-4482 bp Feature: domain Description: Tra5 Location: 43 08-4482 bp Feature: gene Location: 5599-5799 bp Feature: domain Description: Tra5 Location: 5608-5782 bp Feature: domain Description: Tra5 Location: 5608-5782 bp Feature: gene Location: 5812-6939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6112-6769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6112-6769 bp Feature: gene Location: 7238-7765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7244-7388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7244-73 88 bp Feature: domain Description: GIIM Note: maturase Location: 7472-7688 bp Feature: domain Description: GIIM Note: maturase Location: 7472-7688 bp Feature: gene Location: 8118-8360 bp Feature: gene Location: 8272-9891 bp Feature: domain Description: ushA Location: 8287-9889 bp Feature: domain Description: ushA Location: 8287-9889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)