myRT

myRT report for GCA_900486305.1_18787_4_46

Download annotations/find similar RTs

Seq: UIPM01000090.1 Shigella flexneri strain 4028STDY6274959 genome assembly, contig: ERS1017588SCcontig000090, whole genome shotgun sequence (14934 bp)
Overview 1 RT 1: 11792-14493 bp Neighborhood of RT #1 [11792, 14513] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 11792-11947 bp Feature: gene Location: 11973-12299 bp Feature: domain Description: GIIM Note: maturase Location: 12006-12225 bp Feature: domain Description: GIIM Note: maturase Location: 1 2006-1 2225 bp Feature: gene Location: 12352-13155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12652-13147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2652-1 31 47 bp Feature: gene Location: 13168-13368 bp Feature: domain Description: Tra5 Location: 13177-13351 bp Feature: domain Description: Tra5 Location: 1 31 77-1 3351 bp Feature: gene Location: 13764-14513 bp Feature: domain Description: PAP2_acid_phosphatase Location: 13839-14493 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 3839-1 4493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UIPM01000134.1 Shigella flexneri strain 4028STDY6274959 genome assembly, contig: ERS1017588SCcontig000134, whole genome shotgun sequence (8454 bp)
Overview 1 RT 1: 5698-8352 bp Neighborhood of RT #1 [5698, 8352] COG3547 RVT-GII GIIM Feature: gene Location: 5698-6183 bp Feature: domain Description: COG3547 Location: 5716-6169 bp Feature: domain Description: COG3547 Location: 5716-6169 bp Feature: gene Location: 6279-6446 bp Feature: gene Location: 6472-7689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6658-7312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6658-7312 bp Feature: domain Description: GIIM Note: maturase Location: 7390-7612 bp Feature: domain Description: GIIM Note: maturase Location: 7390-7612 bp Feature: gene Location: 7700-8119 bp Feature: gene Location: 8158-8352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)