myRT

myRT report for GCA_900486315.1_18787_4_31

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Seq: UDUY01000159.1 Shigella flexneri strain 4028STDY6274944 genome assembly, contig: ERS1017573SCcontig000159, whole genome shotgun sequence (6251 bp)
Overview 1 RT 1: 3005-5706 bp Neighborhood of RT #1 [3005, 5726] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 3005-3160 bp Feature: gene Location: 3186-3557 bp Feature: domain Description: GIIM Note: maturase Location: 3264-3483 bp Feature: domain Description: GIIM Note: maturase Location: 3264-3483 bp Feature: gene Location: 3565-4368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3865-4360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3865-4360 bp Feature: gene Location: 4381-4581 bp Feature: domain Description: Tra5 Location: 4390-4564 bp Feature: domain Description: Tra5 Location: 4390-4564 bp Feature: gene Location: 4977-5726 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5052-5706 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5052-5706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDUY01000160.1 Shigella flexneri strain 4028STDY6274944 genome assembly, contig: ERS1017573SCcontig000160, whole genome shotgun sequence (6206 bp)
Overview 1 RT 1: 3556-6177 bp Neighborhood of RT #1 [3556, 6203] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3556-4041 bp Feature: domain Description: COG3547 Location: 3574-4027 bp Feature: domain Description: COG3547 Location: 3574-402 7 bp Feature: gene Location: 4137-4304 bp Feature: gene Location: 4330-5547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4516-5170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4516-5170 bp Feature: domain Description: GIIM Note: maturase Location: 5248-5470 bp Feature: domain Description: GIIM Note: maturase Location: 52 48-5470 bp Feature: gene Location: 5558-5941 bp Feature: gene Location: 6024-6203 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6027-6177 bp Feature: domain Description: DDE_Tnp_IS66 Location: 602 7-6177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDUY01000104.1 Shigella flexneri strain 4028STDY6274944 genome assembly, contig: ERS1017573SCcontig000104, whole genome shotgun sequence (12159 bp)
Overview 1 RT 1: 2-4105 bp Neighborhood of RT #1 [2, 4167] InsE PHA02517 RVT-GII GIIM PHA02517 INT_P4_C Feature: gene Location: 2-175 bp Feature: domain Description: InsE Location: 5-164 bp Feature: domain Description: InsE Location: 5-164 bp Feature: gene Location: 202-627 bp Feature: domain Description: PHA02517 Location: 226-562 bp Feature: domain Description: PHA02517 Location: 226-562 bp Feature: gene Location: 1219-2742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492-2224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492-2224 bp Feature: domain Description: GIIM Note: maturase Location: 2299-2497 bp Feature: domain Description: GIIM Note: maturase Location: 2299-2497 bp Feature: gene Location: 2907-3311 bp Feature: domain Description: PHA02517 Location: 2910-3300 bp Feature: domain Description: PHA02517 Location: 2910-3 3 00 bp Feature: gene Location: 3418-4167 bp Feature: domain Description: INT_P4_C Location: 3523-4105 bp Feature: domain Description: INT_P4_C Location: 3 523 -4105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), INT_P4_C (cd00801)