myRT

myRT report for GCA_900486325.1_18787_4_25

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Seq: UDVA01000017.1 Shigella flexneri strain 4028STDY6274938 genome assembly, contig: ERS1017567SCcontig000017, whole genome shotgun sequence (57029 bp)
Overview 1 RT 1: 3189-10605 bp Neighborhood of RT #1 [3189, 10607] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3189-3317 bp Feature: gene Location: 3407-3646 bp Feature: domain Description: PHA02517 Location: 3410-3581 bp Feature: domain Description: PHA0251 7 Location: 341 0-3581 bp Feature: gene Location: 4238-5761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4511-5243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451 1 -5243 bp Feature: domain Description: GIIM Note: maturase Location: 5318-5516 bp Feature: domain Description: GIIM Note: maturase Location: 531 8-551 6 bp Feature: gene Location: 5938-6324 bp Feature: domain Description: PHA02517 Location: 5941-6322 bp Feature: domain Description: PHA0251 7 Location: 5941 -6322 bp Feature: gene Location: 6489-10607 bp Feature: domain Description: ESPR Location: 6492-6561 bp Feature: domain Description: ESPR Location: 6492-6561 bp Feature: domain Description: Peptidase_S6 Location: 6642-8814 bp Feature: domain Description: Peptidase_S6 Location: 6642-881 4 bp Feature: domain Description: autotrans_barl Location: 9378-10605 bp Feature: domain Description: autotrans_barl Location: 9378-1 0605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDVA01000158.1 Shigella flexneri strain 4028STDY6274938 genome assembly, contig: ERS1017567SCcontig000158, whole genome shotgun sequence (6492 bp)
Overview 1 RT 1: 2776-6156 bp Neighborhood of RT #1 [2776, 6176] GIIM PHA02517 RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2776-3165 bp Feature: domain Description: GIIM Note: maturase Location: 2872-3091 bp Feature: domain Description: GIIM Note: maturase Location: 2 872 -3091 bp Feature: gene Location: 3193-3966 bp Feature: domain Description: PHA02517 Location: 3256-3955 bp Feature: domain Description: PHA02 517 Location: 32 56-3955 bp Feature: gene Location: 4015-4818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4315-4810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4315-4810 bp Feature: gene Location: 4831-5031 bp Feature: domain Description: Tra5 Location: 4840-5014 bp Feature: domain Description: Tra5 Location: 4840-5014 bp Feature: gene Location: 5427-6176 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5502-6156 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 5502 -6156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDVA01000167.1 Shigella flexneri strain 4028STDY6274938 genome assembly, contig: ERS1017567SCcontig000167, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3206-5827 bp Neighborhood of RT #1 [3206, 5853] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3206-3691 bp Feature: domain Description: COG3547 Location: 3224-3677 bp Feature: domain Description: COG3 547 Location: 3 224-3 677 bp Feature: gene Location: 3787-3954 bp Feature: gene Location: 3980-5197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4820 bp Feature: domain Description: GIIM Note: maturase Location: 4898-5120 bp Feature: domain Description: GIIM Note: maturase Location: 4898-5120 bp Feature: gene Location: 5208-5591 bp Feature: gene Location: 5674-5853 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5677-5827 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5677-5827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)