myRT

myRT report for GCA_900486335.1_18787_5_39

Download annotations/find similar RTs

Seq: UDVC01000181.1 Shigella flexneri strain 4028STDY6275048 genome assembly, contig: ERS1017673SCcontig000181, whole genome shotgun sequence (5627 bp)
Overview 1 RT 1: 311-3446 bp Neighborhood of RT #1 [311, 3446] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 311-1060 bp Feature: domain Description: PAP2_acid_phosphatase Location: 386-1040 bp Feature: domain Description: PAP2_acid_phosphatase Location: 386-1 040 bp Feature: gene Location: 1456-1656 bp Feature: domain Description: Tra5 Location: 1465-1639 bp Feature: domain Description: Tra5 Location: 1 465-1 639 bp Feature: gene Location: 1669-2472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969-2464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 969-2464 bp Feature: gene Location: 2525-2851 bp Feature: domain Description: GIIM Note: maturase Location: 2558-2777 bp Feature: domain Description: GIIM Note: maturase Location: 2558-2777 bp Feature: gene Location: 3204-3446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDVC01000022.1 Shigella flexneri strain 4028STDY6275048 genome assembly, contig: ERS1017673SCcontig000022, whole genome shotgun sequence (52425 bp)
Overview 1 RT 1: 1-3108 bp Neighborhood of RT #1 [1, 3108] RVT-GII GIIM PHA02517 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02 517 Location: 2 360-2 741 bp Feature: gene Location: 2794-3108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDVC01000158.1 Shigella flexneri strain 4028STDY6275048 genome assembly, contig: ERS1017673SCcontig000158, whole genome shotgun sequence (6924 bp)
Overview 1 RT 1: 140-2725 bp Neighborhood of RT #1 [140, 2739] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 140-271 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152-245 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152-245 bp Feature: gene Location: 832-1965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 4-1588 bp Feature: domain Description: GIIM Note: maturase Location: 1666-1888 bp Feature: domain Description: GIIM Note: maturase Location: 1666-1888 bp Feature: gene Location: 2081-2227 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2093-2204 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2093 -2204 bp Feature: gene Location: 2254-2739 bp Feature: domain Description: COG3547 Location: 2272-2725 bp Feature: domain Description: COG3 547 Location: 2272-2725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)