myRT

myRT report for GCA_900486345.1_18787_4_47

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Seq: UDVB01000083.1 Shigella flexneri strain 4028STDY6274960 genome assembly, contig: ERS1017589SCcontig000083, whole genome shotgun sequence (16967 bp)
Overview 1 RT 1: 156-2741 bp Neighborhood of RT #1 [156, 2755] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 156-287 bp Feature: domain Description: DDE_Tnp_IS66 Location: 168-261 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 68-261 bp Feature: gene Location: 764-1981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1 604 bp Feature: domain Description: GIIM Note: maturase Location: 1682-1904 bp Feature: domain Description: GIIM Note: maturase Location: 1 682-1 904 bp Feature: gene Location: 2097-2243 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2109-2220 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 09-2220 bp Feature: gene Location: 2270-2755 bp Feature: domain Description: COG3547 Location: 2288-2741 bp Feature: domain Description: COG3547 Location: 2288-2741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVB01000017.1 Shigella flexneri strain 4028STDY6274960 genome assembly, contig: ERS1017589SCcontig000017, whole genome shotgun sequence (56376 bp)
Overview 1 RT 1: 3239-10655 bp Neighborhood of RT #1 [3239, 10657] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3239-3367 bp Feature: gene Location: 3457-3696 bp Feature: domain Description: PHA02517 Location: 3460-3631 bp Feature: domain Description: PHA02 517 Location: 3460-3631 bp Feature: gene Location: 4288-5811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-52 93 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: gene Location: 5988-6374 bp Feature: domain Description: PHA02517 Location: 5991-6372 bp Feature: domain Description: PHA02 517 Location: 5991-6372 bp Feature: gene Location: 6539-10657 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: ESPR Location: 6542 -6611 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: Peptidase_S6 Location: 6692 -8864 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Feature: domain Description: autotrans_barl Location: 942 8-10655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDVB01000164.1 Shigella flexneri strain 4028STDY6274960 genome assembly, contig: ERS1017589SCcontig000164, whole genome shotgun sequence (5737 bp)
Overview 1 RT 1: 418-3553 bp Neighborhood of RT #1 [418, 3553] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 418-1167 bp Feature: domain Description: PAP2_acid_phosphatase Location: 493-1147 bp Feature: domain Description: PAP2_acid_phosphatase Location: 493 -1147 bp Feature: gene Location: 1563-1763 bp Feature: domain Description: Tra5 Location: 1572-1746 bp Feature: domain Description: Tra5 Location: 1572-1746 bp Feature: gene Location: 1776-2579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2076-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2076-2571 bp Feature: gene Location: 2632-2958 bp Feature: domain Description: GIIM Note: maturase Location: 2665-2884 bp Feature: domain Description: GIIM Note: maturase Location: 2665-2884 bp Feature: gene Location: 3311-3553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)