myRT

myRT report for GCA_900486355.1_18787_4_44

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Seq: UDVD01000140.1 Shigella flexneri strain 4028STDY6274957 genome assembly, contig: ERS1017586SCcontig000140, whole genome shotgun sequence (8565 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVD01000099.1 Shigella flexneri strain 4028STDY6274957 genome assembly, contig: ERS1017586SCcontig000099, whole genome shotgun sequence (13080 bp)
Overview 1 RT 1: 7666-10761 bp Neighborhood of RT #1 [7666, 10761] PRK10053 PHA02517 RVT-GII GIIM Feature: gene Location: 7666-7899 bp Feature: domain Description: PRK10053 Location: 7669-7891 bp Feature: domain Description: PRK10053 Location: 7669-7891 bp Feature: gene Location: 8294-8971 bp Feature: domain Description: PHA02517 Location: 8309-8954 bp Feature: domain Description: PHA02 517 Location: 8309-8954 bp Feature: gene Location: 8984-9787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9284-9779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 84-9779 bp Feature: gene Location: 9840-10166 bp Feature: domain Description: GIIM Note: maturase Location: 9873-10092 bp Feature: domain Description: GIIM Note: maturase Location: 9873-10092 bp Feature: gene Location: 10519-10761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10053 (YdeI family stress tolerance OB fold protein), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDVD01000191.1 Shigella flexneri strain 4028STDY6274957 genome assembly, contig: ERS1017586SCcontig000191, whole genome shotgun sequence (4295 bp)
Overview 1 RT 1: 1283-3958 bp Neighborhood of RT #1 [1283, 4203] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1283-1609 bp Feature: domain Description: InsE Location: 1286-1607 bp Feature: domain Description: InsE Location: 1286-1607 bp Feature: gene Location: 1849-2088 bp Feature: domain Description: PHA02517 Location: 1852-2023 bp Feature: domain Description: PHA02517 Location: 1852-2023 bp Feature: gene Location: 2680-4203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2953-3685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2953 -3 685 bp Feature: domain Description: GIIM Note: maturase Location: 3760-3958 bp Feature: domain Description: GIIM Note: maturase Location: 3 760-3 958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)