myRT

myRT report for GCA_900486375.1_18787_4_43

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Seq: UDVL01000152.1 Shigella flexneri strain 4028STDY6274956 genome assembly, contig: ERS1017585SCcontig000152, whole genome shotgun sequence (6443 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVL01000003.1 Shigella flexneri strain 4028STDY6274956 genome assembly, contig: ERS1017585SCcontig000003, whole genome shotgun sequence (78371 bp)
Overview 1 RT 1: 1-7823 bp Neighborhood of RT #1 [1, 7972] RVT-GII GIIM PHA02517 ushA GIIM RVT-GII PHA02517 DUF1016_N Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02 517 Location: 2 360-2 741 bp Feature: gene Location: 3084-4736 bp Feature: domain Description: ushA Location: 3096-4734 bp Feature: domain Description: ushA Location: 3096-4734 bp Feature: gene Location: 5062-5217 bp Feature: gene Location: 5243-5569 bp Feature: domain Description: GIIM Note: maturase Location: 5276-5495 bp Feature: domain Description: GIIM Note: maturase Location: 52 76-5495 bp Feature: gene Location: 5622-6425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5922-6417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592 2 -6417 bp Feature: gene Location: 6438-7010 bp Feature: domain Description: PHA02517 Location: 6456-6993 bp Feature: domain Description: PHA02 517 Location: 6456-6993 bp Feature: gene Location: 7493-7972 bp Feature: domain Description: DUF1016_N Location: 7550-7823 bp Feature: domain Description: DUF1016_N Location: 7550-782 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ushA (PRK09558), RVT-GII, GIIM (pfam08388), DUF1016_N (pfam17761)

Seq: UDVL01000155.1 Shigella flexneri strain 4028STDY6274956 genome assembly, contig: ERS1017585SCcontig000155, whole genome shotgun sequence (6399 bp)
Overview 1 RT 1: 1775-5967 bp Neighborhood of RT #1 [1775, 5987] OafA RVT-GII rve Tra5 PAP2_acid_phosphatase Feature: gene Location: 1775-2947 bp Feature: domain Description: OafA Location: 1889-2909 bp Feature: domain Description: OafA Location: 1889-2909 bp Feature: gene Location: 3001-3624 bp Feature: gene Location: 3751-4629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4051-4144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4051-4144 bp Feature: domain Description: rve Location: 4144-4474 bp Feature: domain Description: rve Location: 4144-4474 bp Feature: gene Location: 4642-4842 bp Feature: domain Description: Tra5 Location: 4651-4825 bp Feature: domain Description: Tra5 Location: 4651-4825 bp Feature: gene Location: 5238-5987 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5313-5967 bp Feature: domain Description: PAP2_acid_phosphatase Location: 53 13 -5967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), RVT-GII, rve (pfam00665), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)