myRT

myRT report for GCA_900486385.1_18787_4_48

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Seq: UDVI01000019.1 Shigella flexneri strain 4028STDY6274961 genome assembly, contig: ERS1017590SCcontig000019, whole genome shotgun sequence (55920 bp)
Overview 1 RT 1: 2094-10190 bp Neighborhood of RT #1 [2094, 10192] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 2094-2396 bp Feature: domain Description: InsE Location: 2103-2385 bp Feature: domain Description: InsE Location: 21 03-2385 bp Feature: gene Location: 2423-3202 bp Feature: domain Description: PHA02517 Location: 2447-3167 bp Feature: domain Description: PHA0251 7 Location: 2447-31 67 bp Feature: gene Location: 3823-5346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4096-4828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4096-4828 bp Feature: domain Description: GIIM Note: maturase Location: 4903-5101 bp Feature: domain Description: GIIM Note: maturase Location: 4903-51 01 bp Feature: gene Location: 5523-5909 bp Feature: domain Description: PHA02517 Location: 5526-5907 bp Feature: domain Description: PHA0251 7 Location: 5526-5907 bp Feature: gene Location: 6074-10192 bp Feature: domain Description: ESPR Location: 6077-6146 bp Feature: domain Description: ESPR Location: 6077-61 46 bp Feature: domain Description: Peptidase_S6 Location: 6227-8399 bp Feature: domain Description: Peptidase_S6 Location: 6227-8399 bp Feature: domain Description: autotrans_barl Location: 8963-10190 bp Feature: domain Description: autotrans_barl Location: 8963-1 01 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDVI01000156.1 Shigella flexneri strain 4028STDY6274961 genome assembly, contig: ERS1017590SCcontig000156, whole genome shotgun sequence (6182 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1042 -1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2 12 1-2 2 95 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 5-312 0 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 32 14-3433 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDVI01000031.1 Shigella flexneri strain 4028STDY6274961 genome assembly, contig: ERS1017590SCcontig000031, whole genome shotgun sequence (42930 bp)
Overview 1 RT 1: 1-3714 bp Neighborhood of RT #1 [1, 3734] DDE_Tnp_IS66 RVT-GII GIIM COG3547 sopB_N HTH_24 ParB Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3 547 Location: 2184-263 7 bp Feature: gene Location: 2907-3734 bp Feature: domain Description: sopB_N Location: 2931-3126 bp Feature: domain Description: sopB_N Location: 293 1-3 126 bp Feature: domain Description: HTH_24 Location: 3228-3303 bp Feature: domain Description: HTH_24 Location: 3 228-3 3 03 bp Feature: domain Description: ParB Location: 3339-3714 bp Feature: domain Description: ParB Location: 3 3 3 9-3 714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase ), sopB_N (cd16394), HTH_24 (pfam13412), ParB (smart00470), RVT-GII, GIIM (pfam08388)