myRT

myRT report for GCA_900486405.1_18787_4_23

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Seq: UDVK01000081.1 Shigella flexneri strain 4028STDY6274936 genome assembly, contig: ERS1017565SCcontig000081, whole genome shotgun sequence (17686 bp)
Overview 1 RT 1: 15036-17657 bp Neighborhood of RT #1 [15036, 17683] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 15036-15521 bp Feature: domain Description: COG3547 Location: 15054-15507 bp Feature: domain Description: COG3547 Location: 1 5054-1 5507 bp Feature: gene Location: 15617-15784 bp Feature: gene Location: 15810-17027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15996-16650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5996-1 6650 bp Feature: domain Description: GIIM Note: maturase Location: 16728-16950 bp Feature: domain Description: GIIM Note: maturase Location: 1 6728-1 6950 bp Feature: gene Location: 17038-17421 bp Feature: gene Location: 17504-17683 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17507-17657 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 7507-1 7657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDVK01000150.1 Shigella flexneri strain 4028STDY6274936 genome assembly, contig: ERS1017565SCcontig000150, whole genome shotgun sequence (6291 bp)
Overview 1 RT 1: 1010-4145 bp Neighborhood of RT #1 [1010, 4145] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1010-1759 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1085-1739 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1085-1739 bp Feature: gene Location: 2155-2355 bp Feature: domain Description: Tra5 Location: 2164-2338 bp Feature: domain Description: Tra5 Location: 2 164-2 338 bp Feature: gene Location: 2368-3171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2668-3163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 668-3163 bp Feature: gene Location: 3224-3550 bp Feature: domain Description: GIIM Note: maturase Location: 3257-3476 bp Feature: domain Description: GIIM Note: maturase Location: 32 57-3476 bp Feature: gene Location: 3903-4145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UDVK01000024.1 Shigella flexneri strain 4028STDY6274936 genome assembly, contig: ERS1017565SCcontig000024, whole genome shotgun sequence (54794 bp)
Overview 1 RT 1: 1670-9086 bp Neighborhood of RT #1 [1670, 9088] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1670-1798 bp Feature: gene Location: 1888-2127 bp Feature: domain Description: PHA02517 Location: 1891-2062 bp Feature: domain Description: PHA02517 Location: 1891-2062 bp Feature: gene Location: 2719-4242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2992-3724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2992-3 724 bp Feature: domain Description: GIIM Note: maturase Location: 3799-3997 bp Feature: domain Description: GIIM Note: maturase Location: 3 799-3 997 bp Feature: gene Location: 4419-4805 bp Feature: domain Description: PHA02517 Location: 4422-4803 bp Feature: domain Description: PHA02517 Location: 4422-4803 bp Feature: gene Location: 4970-9088 bp Feature: domain Description: ESPR Location: 4973-5042 bp Feature: domain Description: ESPR Location: 4973 -5042 bp Feature: domain Description: Peptidase_S6 Location: 5123-7295 bp Feature: domain Description: Peptidase_S6 Location: 5123 -7295 bp Feature: domain Description: autotrans_barl Location: 7859-9086 bp Feature: domain Description: autotrans_barl Location: 7859-9086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)