myRT

myRT report for GCA_900486415.1_18787_4_56

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Seq: UDVO01000125.1 Shigella flexneri strain 4028STDY6274969 genome assembly, contig: ERS1017601SCcontig000125, whole genome shotgun sequence (9672 bp)
Overview 1 RT 1: 7022-9643 bp Neighborhood of RT #1 [7022, 9669] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 7022-7507 bp Feature: domain Description: COG3547 Location: 7040-7493 bp Feature: domain Description: COG3547 Location: 7040-7493 bp Feature: gene Location: 7603-7770 bp Feature: gene Location: 7796-9013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7982-8636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7982-8636 bp Feature: domain Description: GIIM Note: maturase Location: 8714-8936 bp Feature: domain Description: GIIM Note: maturase Location: 871 4-8936 bp Feature: gene Location: 9024-9407 bp Feature: gene Location: 9490-9669 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9493-9643 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9493-9643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDVO01000089.1 Shigella flexneri strain 4028STDY6274969 genome assembly, contig: ERS1017601SCcontig000089, whole genome shotgun sequence (14617 bp)
Overview 1 RT 1: 7841-11117 bp Neighborhood of RT #1 [7841, 11182] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 7841-8083 bp Feature: gene Location: 8215-8754 bp Feature: domain Description: PHA02517 Location: 8482-8752 bp Feature: domain Description: PHA02 517 Location: 8482 -8752 bp Feature: gene Location: 8779-10302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9052-9784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9052 -9784 bp Feature: domain Description: GIIM Note: maturase Location: 9859-10057 bp Feature: domain Description: GIIM Note: maturase Location: 9859-10057 bp Feature: gene Location: 10256-10678 bp Feature: gene Location: 10901-11182 bp Feature: domain Description: PHA02517 Location: 10907-11117 bp Feature: domain Description: PHA02 517 Location: 10907-11117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDVO01000161.1 Shigella flexneri strain 4028STDY6274969 genome assembly, contig: ERS1017601SCcontig000161, whole genome shotgun sequence (6287 bp)
Overview 1 RT 1: 968-4103 bp Neighborhood of RT #1 [968, 4103] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 968-1717 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1043-1697 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1043 -1697 bp Feature: gene Location: 2113-2313 bp Feature: domain Description: Tra5 Location: 2122-2296 bp Feature: domain Description: Tra5 Location: 2122-2296 bp Feature: gene Location: 2326-3129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2626-3121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2626-3 121 bp Feature: gene Location: 3182-3508 bp Feature: domain Description: GIIM Note: maturase Location: 3215-3434 bp Feature: domain Description: GIIM Note: maturase Location: 3 215-3 43 4 bp Feature: gene Location: 3861-4103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)