myRT

myRT report for GCA_900486425.1_18787_4_40

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Seq: UDVQ01000191.1 Shigella flexneri strain 4028STDY6274953 genome assembly, contig: ERS1017582SCcontig000191, whole genome shotgun sequence (4167 bp)
Overview 1 RT 1: 2-1986 bp Neighborhood of RT #1 [2, 1986] Tra5 RVT-GII GIIM Feature: gene Location: 2-196 bp Feature: domain Description: Tra5 Location: 11-179 bp Feature: domain Description: Tra5 Location: 1 1 -1 79 bp Feature: gene Location: 209-1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1 004 bp Feature: gene Location: 1065-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1317 bp Feature: domain Description: GIIM Note: maturase Location: 1 098-1 31 7 bp Feature: gene Location: 1744-1986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)

Seq: UDVQ01000014.1 Shigella flexneri strain 4028STDY6274953 genome assembly, contig: ERS1017582SCcontig000014, whole genome shotgun sequence (62924 bp)
Overview 1 RT 1: 1620-6306 bp Neighborhood of RT #1 [1620, 6317] PHA02517 RVT-GII GIIM PHA02517 YfaS Feature: gene Location: 1620-1748 bp Feature: gene Location: 1838-2077 bp Feature: domain Description: PHA02517 Location: 1841-2012 bp Feature: domain Description: PHA02 517 Location: 1841-2 012 bp Feature: gene Location: 2669-4192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942-3674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 942 -3674 bp Feature: domain Description: GIIM Note: maturase Location: 3749-3947 bp Feature: domain Description: GIIM Note: maturase Location: 3749-3947 bp Feature: gene Location: 4357-4761 bp Feature: domain Description: PHA02517 Location: 4360-4750 bp Feature: domain Description: PHA02 517 Location: 4360-4750 bp Feature: gene Location: 4755-6317 bp Feature: domain Description: YfaS Location: 4767-6306 bp Feature: domain Description: YfaS Location: 4767-6306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), YfaS (COG2373)

Seq: UDVQ01000167.1 Shigella flexneri strain 4028STDY6274953 genome assembly, contig: ERS1017582SCcontig000167, whole genome shotgun sequence (5882 bp)
Overview 1 RT 1: 3232-5853 bp Neighborhood of RT #1 [3232, 5879] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3232-3717 bp Feature: domain Description: COG3547 Location: 3250-3703 bp Feature: domain Description: COG3 547 Location: 3 250-3 703 bp Feature: gene Location: 3813-3980 bp Feature: gene Location: 4006-5223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4192-4846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4192-4846 bp Feature: domain Description: GIIM Note: maturase Location: 4924-5146 bp Feature: domain Description: GIIM Note: maturase Location: 4924-5146 bp Feature: gene Location: 5234-5617 bp Feature: gene Location: 5700-5879 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5703-5853 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5703 -5853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)