myRT

myRT report for GCA_900486435.1_18787_4_26

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Seq: UDVM01000086.1 Shigella flexneri strain 4028STDY6274939 genome assembly, contig: ERS1017568SCcontig000086, whole genome shotgun sequence (17130 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVM01000024.1 Shigella flexneri strain 4028STDY6274939 genome assembly, contig: ERS1017568SCcontig000024, whole genome shotgun sequence (53665 bp)
Overview 1 RT 1: 1-2889 bp Neighborhood of RT #1 [1, 3113] RVT-GII GIIM PHA02517 GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2357-2713 bp Feature: domain Description: PHA02517 Location: 2360-2630 bp Feature: domain Description: PHA02 517 Location: 2 360-2 630 bp Feature: gene Location: 2727-3113 bp Feature: domain Description: GIIM Note: maturase Location: 2733-2889 bp Feature: domain Description: GIIM Note: maturase Location: 2 733-2 889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), RVT-GII

Seq: UDVM01000134.1 Shigella flexneri strain 4028STDY6274939 genome assembly, contig: ERS1017568SCcontig000134, whole genome shotgun sequence (8525 bp)
Overview 1 RT 1: 4954-8404 bp Neighborhood of RT #1 [4954, 8469] DUF2534 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 4954-5121 bp Feature: domain Description: DUF2534 Location: 4969-5119 bp Feature: domain Description: DUF253 4 Location: 4969-5119 bp Feature: gene Location: 5321-5725 bp Feature: domain Description: PHA02517 Location: 5324-5714 bp Feature: domain Description: PHA02517 Location: 53 24-5714 bp Feature: gene Location: 5890-7413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6163-6895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6163 -6895 bp Feature: domain Description: GIIM Note: maturase Location: 6970-7168 bp Feature: domain Description: GIIM Note: maturase Location: 6970-7168 bp Feature: gene Location: 7367-7792 bp Feature: gene Location: 8005-8469 bp Feature: domain Description: PHA02517 Location: 8077-8404 bp Feature: domain Description: PHA02517 Location: 8077-8404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2534 (pfam10749), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDVM01000016.1 Shigella flexneri strain 4028STDY6274939 genome assembly, contig: ERS1017568SCcontig000016, whole genome shotgun sequence (60634 bp)
Overview 1 RT 1: 518-3653 bp Neighborhood of RT #1 [518, 3653] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 518-1267 bp Feature: domain Description: PAP2_acid_phosphatase Location: 593-1247 bp Feature: domain Description: PAP2_acid_phosphatase Location: 593-124 7 bp Feature: gene Location: 1663-1863 bp Feature: domain Description: Tra5 Location: 1672-1846 bp Feature: domain Description: Tra5 Location: 1672-184 6 bp Feature: gene Location: 1876-2679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176-2671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176-2671 bp Feature: gene Location: 2732-3058 bp Feature: domain Description: GIIM Note: maturase Location: 2765-2984 bp Feature: domain Description: GIIM Note: maturase Location: 2765-2984 bp Feature: gene Location: 3411-3653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)