myRT

myRT report for GCA_900486465.1_18787_4_38

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Seq: UDVS01000122.1 Shigella flexneri strain 4028STDY6274951 genome assembly, contig: ERS1017580SCcontig000122, whole genome shotgun sequence (10096 bp)
Overview 1 RT 1: 1613-9768 bp Neighborhood of RT #1 [1613, 9788] PHA02517 RVT-GII GIIM PHA02517 ushA GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 1613-1741 bp Feature: gene Location: 1591-2070 bp Feature: domain Description: PHA02517 Location: 1651-2005 bp Feature: domain Description: PHA0251 7 Location: 1 651 -2005 bp Feature: gene Location: 2662-4185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2935-3667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2935-3667 bp Feature: domain Description: GIIM Note: maturase Location: 3742-3940 bp Feature: domain Description: GIIM Note: maturase Location: 3742-3940 bp Feature: gene Location: 4362-4748 bp Feature: domain Description: PHA02517 Location: 4365-4746 bp Feature: domain Description: PHA0251 7 Location: 4365-4746 bp Feature: gene Location: 5089-6741 bp Feature: domain Description: ushA Location: 5101-6739 bp Feature: domain Description: ushA Location: 51 01 -6739 bp Feature: gene Location: 7067-7222 bp Feature: gene Location: 7248-7619 bp Feature: domain Description: GIIM Note: maturase Location: 7326-7545 bp Feature: domain Description: GIIM Note: maturase Location: 7326-7545 bp Feature: gene Location: 7627-8430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7927-8422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7927-8422 bp Feature: gene Location: 8443-8643 bp Feature: domain Description: Tra5 Location: 8452-8626 bp Feature: domain Description: Tra5 Location: 8452-8626 bp Feature: gene Location: 9039-9788 bp Feature: domain Description: PAP2_acid_phosphatase Location: 9114-9768 bp Feature: domain Description: PAP2_acid_phosphatase Location: 91 1 4-9768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ushA (PRK09558), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDVS01000154.1 Shigella flexneri strain 4028STDY6274951 genome assembly, contig: ERS1017580SCcontig000154, whole genome shotgun sequence (6940 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)