myRT

myRT report for GCA_900486475.1_18787_4_74

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Seq: UDVP01000083.1 Shigella flexneri strain 4028STDY6274987 genome assembly, contig: ERS1017637SCcontig000083, whole genome shotgun sequence (17884 bp)
Overview 1 RT 1: 140-2725 bp Neighborhood of RT #1 [140, 2739] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 140-271 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152-245 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 52-245 bp Feature: gene Location: 748-1965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1 588 bp Feature: domain Description: GIIM Note: maturase Location: 1666-1888 bp Feature: domain Description: GIIM Note: maturase Location: 1 666-1 888 bp Feature: gene Location: 2081-2227 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2093-2204 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2093-2204 bp Feature: gene Location: 2254-2739 bp Feature: domain Description: COG3547 Location: 2272-2725 bp Feature: domain Description: COG3547 Location: 2272-2725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVP01000022.1 Shigella flexneri strain 4028STDY6274987 genome assembly, contig: ERS1017637SCcontig000022, whole genome shotgun sequence (52754 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02 517 Location: 2 360-2 741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 2 911-2 980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3061-52 33 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-702 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: UDVP01000167.1 Shigella flexneri strain 4028STDY6274987 genome assembly, contig: ERS1017637SCcontig000167, whole genome shotgun sequence (5732 bp)
Overview 1 RT 1: 517-3652 bp Neighborhood of RT #1 [517, 3652] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 517-1266 bp Feature: domain Description: PAP2_acid_phosphatase Location: 592-1246 bp Feature: domain Description: PAP2_acid_phosphatase Location: 592-1246 bp Feature: gene Location: 1662-1862 bp Feature: domain Description: Tra5 Location: 1671-1845 bp Feature: domain Description: Tra5 Location: 1671-1845 bp Feature: gene Location: 1875-2678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2175-2670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2175-2670 bp Feature: gene Location: 2731-3057 bp Feature: domain Description: GIIM Note: maturase Location: 2764-2983 bp Feature: domain Description: GIIM Note: maturase Location: 2764-2983 bp Feature: gene Location: 3410-3652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)