myRT

myRT report for GCA_900486485.1_18787_4_50

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Seq: UIPI01000138.1 Shigella flexneri strain 4028STDY6274963 genome assembly, contig: ERS1017592SCcontig000138, whole genome shotgun sequence (8611 bp)
Overview 1 RT 1: 2-2707 bp Neighborhood of RT #1 [2, 2721] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-253 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5-227 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5-227 bp Feature: gene Location: 814-1947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 6-1 570 bp Feature: domain Description: GIIM Note: maturase Location: 1648-1870 bp Feature: domain Description: GIIM Note: maturase Location: 1 648-1 870 bp Feature: gene Location: 2063-2209 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2075-2186 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2075-21 86 bp Feature: gene Location: 2236-2721 bp Feature: domain Description: COG3547 Location: 2254-2707 bp Feature: domain Description: COG3547 Location: 2254-2707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: UIPI01000020.1 Shigella flexneri strain 4028STDY6274963 genome assembly, contig: ERS1017592SCcontig000020, whole genome shotgun sequence (53494 bp)
Overview 1 RT 1: 73-7786 bp Neighborhood of RT #1 [73, 7788] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 73-375 bp Feature: domain Description: InsE Location: 82-364 bp Feature: domain Description: InsE Location: 82 -364 bp Feature: gene Location: 402-827 bp Feature: domain Description: PHA02517 Location: 426-762 bp Feature: domain Description: PHA02 517 Location: 42 6-762 bp Feature: gene Location: 1419-2942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692-2424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692 -2 42 4 bp Feature: domain Description: GIIM Note: maturase Location: 2499-2697 bp Feature: domain Description: GIIM Note: maturase Location: 2 499-2 697 bp Feature: gene Location: 3119-3505 bp Feature: domain Description: PHA02517 Location: 3122-3503 bp Feature: domain Description: PHA02 517 Location: 312 2 -3503 bp Feature: gene Location: 3670-7788 bp Feature: domain Description: ESPR Location: 3673-3742 bp Feature: domain Description: ESPR Location: 3673-3742 bp Feature: domain Description: Peptidase_S6 Location: 3823-5995 bp Feature: domain Description: Peptidase_S6 Location: 382 3-5995 bp Feature: domain Description: autotrans_barl Location: 6559-7786 bp Feature: domain Description: autotrans_barl Location: 6559-7786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), InsE (COG2963)

Seq: UIPI01000170.1 Shigella flexneri strain 4028STDY6274963 genome assembly, contig: ERS1017592SCcontig000170, whole genome shotgun sequence (5598 bp)
Overview 1 RT 1: 317-3452 bp Neighborhood of RT #1 [317, 3452] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 317-1066 bp Feature: domain Description: PAP2_acid_phosphatase Location: 392-1046 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3 92-1046 bp Feature: gene Location: 1462-1662 bp Feature: domain Description: Tra5 Location: 1471-1645 bp Feature: domain Description: Tra5 Location: 1471-1645 bp Feature: gene Location: 1675-2478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2470 bp Feature: gene Location: 2531-2857 bp Feature: domain Description: GIIM Note: maturase Location: 2564-2783 bp Feature: domain Description: GIIM Note: maturase Location: 2564-2783 bp Feature: gene Location: 3210-3452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)