myRT

myRT report for GCA_900486495.1_18787_4_55

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Seq: UIPH01000140.1 Shigella flexneri strain 4028STDY6274968 genome assembly, contig: ERS1017599SCcontig000140, whole genome shotgun sequence (8182 bp)
Overview 1 RT 1: 4940-7641 bp Neighborhood of RT #1 [4940, 7661] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 4940-5095 bp Feature: gene Location: 5121-5492 bp Feature: domain Description: GIIM Note: maturase Location: 5199-5418 bp Feature: domain Description: GIIM Note: maturase Location: 51 99-541 8 bp Feature: gene Location: 5500-6303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5800-6295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5800-6295 bp Feature: gene Location: 6316-6516 bp Feature: domain Description: Tra5 Location: 6325-6499 bp Feature: domain Description: Tra5 Location: 6325-6499 bp Feature: gene Location: 6912-7661 bp Feature: domain Description: PAP2_acid_phosphatase Location: 6987-7641 bp Feature: domain Description: PAP2_acid_phosphatase Location: 6987-7641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UIPH01000004.1 Shigella flexneri strain 4028STDY6274968 genome assembly, contig: ERS1017599SCcontig000004, whole genome shotgun sequence (78389 bp)
Overview 1 RT 1: 154-2739 bp Neighborhood of RT #1 [154, 2753] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 154-285 bp Feature: domain Description: DDE_Tnp_IS66 Location: 166-259 bp Feature: domain Description: DDE_Tnp_IS66 Location: 166-2 59 bp Feature: gene Location: 846-1979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1602 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1902 bp Feature: gene Location: 2095-2241 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2107-2218 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 107-2 2 18 bp Feature: gene Location: 2268-2753 bp Feature: domain Description: COG3547 Location: 2286-2739 bp Feature: domain Description: COG3547 Location: 2 2 86-2 739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIPH01000020.1 Shigella flexneri strain 4028STDY6274968 genome assembly, contig: ERS1017599SCcontig000020, whole genome shotgun sequence (54729 bp)
Overview 1 RT 1: 1605-9021 bp Neighborhood of RT #1 [1605, 9023] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1605-1733 bp Feature: gene Location: 1823-2062 bp Feature: domain Description: PHA02517 Location: 1826-1997 bp Feature: domain Description: PHA02517 Location: 1826-1997 bp Feature: gene Location: 2654-4177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2927-3659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2927-3 659 bp Feature: domain Description: GIIM Note: maturase Location: 3734-3932 bp Feature: domain Description: GIIM Note: maturase Location: 3 73 4-3 93 2 bp Feature: gene Location: 4354-4740 bp Feature: domain Description: PHA02517 Location: 4357-4738 bp Feature: domain Description: PHA02517 Location: 43 57-473 8 bp Feature: gene Location: 4905-9023 bp Feature: domain Description: ESPR Location: 4908-4977 bp Feature: domain Description: ESPR Location: 4908-4977 bp Feature: domain Description: Peptidase_S6 Location: 5058-7230 bp Feature: domain Description: Peptidase_S6 Location: 5058-723 0 bp Feature: domain Description: autotrans_barl Location: 7794-9021 bp Feature: domain Description: autotrans_barl Location: 7794-9021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)