myRT

myRT report for GCA_900486505.1_18787_4_73

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Seq: UIPN01000033.1 Shigella flexneri strain 4028STDY6274986 genome assembly, contig: ERS1017635SCcontig000033, whole genome shotgun sequence (38907 bp)
Overview 1 RT 1: 1608-9024 bp Neighborhood of RT #1 [1608, 9026] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1608-1736 bp Feature: gene Location: 1826-2065 bp Feature: domain Description: PHA02517 Location: 1829-2000 bp Feature: domain Description: PHA0251 7 Location: 1 829-2000 bp Feature: gene Location: 2657-4180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930-3662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930-3662 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: gene Location: 4357-4743 bp Feature: domain Description: PHA02517 Location: 4360-4741 bp Feature: domain Description: PHA0251 7 Location: 4360-4741 bp Feature: gene Location: 4908-9026 bp Feature: domain Description: ESPR Location: 4911-4980 bp Feature: domain Description: ESPR Location: 491 1 -4980 bp Feature: domain Description: Peptidase_S6 Location: 5061-7233 bp Feature: domain Description: Peptidase_S6 Location: 5061 -7233 bp Feature: domain Description: autotrans_barl Location: 7797-9024 bp Feature: domain Description: autotrans_barl Location: 7797-9024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIPN01000170.1 Shigella flexneri strain 4028STDY6274986 genome assembly, contig: ERS1017635SCcontig000170, whole genome shotgun sequence (5613 bp)
Overview 1 RT 1: 2578-5279 bp Neighborhood of RT #1 [2578, 5299] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2578-2733 bp Feature: gene Location: 2759-3130 bp Feature: domain Description: GIIM Note: maturase Location: 2837-3056 bp Feature: domain Description: GIIM Note: maturase Location: 2 837-3056 bp Feature: gene Location: 3138-3941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3438-3933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3438-3933 bp Feature: gene Location: 3954-4154 bp Feature: domain Description: Tra5 Location: 3963-4137 bp Feature: domain Description: Tra5 Location: 3963-4137 bp Feature: gene Location: 4550-5299 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4625-5279 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 462 5-52 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UIPN01000152.1 Shigella flexneri strain 4028STDY6274986 genome assembly, contig: ERS1017635SCcontig000152, whole genome shotgun sequence (6982 bp)
Overview 1 RT 1: 4227-6880 bp Neighborhood of RT #1 [4227, 6880] COG3547 RVT-GII GIIM Feature: gene Location: 4227-4712 bp Feature: domain Description: COG3547 Location: 4245-4698 bp Feature: domain Description: COG3 547 Location: 4245-4698 bp Feature: gene Location: 4808-4975 bp Feature: gene Location: 5001-6218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187-5841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187-5841 bp Feature: domain Description: GIIM Note: maturase Location: 5919-6141 bp Feature: domain Description: GIIM Note: maturase Location: 5919-6141 bp Feature: gene Location: 6229-6612 bp Feature: gene Location: 6686-6880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)