myRT

myRT report for GCA_900486515.1_18787_4_36

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Seq: UDVT01000034.1 Shigella flexneri strain 4028STDY6274949 genome assembly, contig: ERS1017578SCcontig000034, whole genome shotgun sequence (39846 bp)
Overview 1 RT 1: 3252-7007 bp Neighborhood of RT #1 [3252, 7009] PHA02517 RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 3252-3380 bp Feature: gene Location: 3470-3709 bp Feature: domain Description: PHA02517 Location: 3473-3644 bp Feature: domain Description: PHA0251 7 Location: 3473-3644 bp Feature: gene Location: 4301-5824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4574-5306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4574-5306 bp Feature: domain Description: GIIM Note: maturase Location: 5381-5579 bp Feature: domain Description: GIIM Note: maturase Location: 5381 -5579 bp Feature: gene Location: 5989-6378 bp Feature: domain Description: PHA02517 Location: 5992-6301 bp Feature: domain Description: PHA0251 7 Location: 5992-6301 bp Feature: gene Location: 6623-7009 bp Feature: domain Description: PHA02517 Location: 6626-7007 bp Feature: domain Description: PHA0251 7 Location: 6626-7007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDVT01000169.1 Shigella flexneri strain 4028STDY6274949 genome assembly, contig: ERS1017578SCcontig000169, whole genome shotgun sequence (5773 bp)
Overview 1 RT 1: 3037-5770 bp Neighborhood of RT #1 [3037, 5770] COG3547 RVT-GII GIIM Feature: gene Location: 3037-3522 bp Feature: domain Description: COG3547 Location: 3055-3508 bp Feature: domain Description: COG3547 Location: 3055-3508 bp Feature: gene Location: 3618-3785 bp Feature: gene Location: 3811-5028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3997-4651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3997-4651 bp Feature: domain Description: GIIM Note: maturase Location: 4729-4951 bp Feature: domain Description: GIIM Note: maturase Location: 472 9-4951 bp Feature: gene Location: 5039-5422 bp Feature: gene Location: 5507-5770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVT01000150.1 Shigella flexneri strain 4028STDY6274949 genome assembly, contig: ERS1017578SCcontig000150, whole genome shotgun sequence (7450 bp)
Overview 1 RT 1: 311-4580 bp Neighborhood of RT #1 [311, 4580] PAP2_acid_phosphatase Tra5 RVT-GII Tra5 RVT-GII GIIM Feature: gene Location: 311-1060 bp Feature: domain Description: PAP2_acid_phosphatase Location: 386-1040 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3 86-1040 bp Feature: gene Location: 1456-1656 bp Feature: domain Description: Tra5 Location: 1465-1639 bp Feature: domain Description: Tra5 Location: 1465-163 9 bp Feature: gene Location: 1669-2172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969-2158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969-2158 bp Feature: gene Location: 2590-2790 bp Feature: domain Description: Tra5 Location: 2599-2773 bp Feature: domain Description: Tra5 Location: 2599-2773 bp Feature: gene Location: 2803-3606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3103-3598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 103 -3 598 bp Feature: gene Location: 3659-3985 bp Feature: domain Description: GIIM Note: maturase Location: 3692-3911 bp Feature: domain Description: GIIM Note: maturase Location: 3 692-3 911 bp Feature: gene Location: 4338-4580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)