myRT

myRT report for GCA_900486525.1_18787_4_42

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Seq: UIPK01000132.1 Shigella flexneri strain 4028STDY6274955 genome assembly, contig: ERS1017584SCcontig000132, whole genome shotgun sequence (9216 bp)
Overview 1 RT 1: 73-4310 bp Neighborhood of RT #1 [73, 4372] InsE PHA02517 RVT-GII GIIM PHA02517 INT_P4_C Feature: gene Location: 73-375 bp Feature: domain Description: InsE Location: 82-364 bp Feature: domain Description: InsE Location: 82-364 bp Feature: gene Location: 402-827 bp Feature: domain Description: PHA02517 Location: 426-762 bp Feature: domain Description: PHA0251 7 Location: 426-762 bp Feature: gene Location: 1419-2942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692-2424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 692-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2499-2697 bp Feature: domain Description: GIIM Note: maturase Location: 2499-2697 bp Feature: gene Location: 3112-3516 bp Feature: domain Description: PHA02517 Location: 3115-3505 bp Feature: domain Description: PHA0251 7 Location: 31 1 5-3505 bp Feature: gene Location: 3623-4372 bp Feature: domain Description: INT_P4_C Location: 3728-4310 bp Feature: domain Description: INT_P4_C Location: 3728-431 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), INT_P4_C (cd00801), InsE (COG2963)

Seq: UIPK01000186.1 Shigella flexneri strain 4028STDY6274955 genome assembly, contig: ERS1017584SCcontig000186, whole genome shotgun sequence (4373 bp)
Overview 1 RT 1: 1-2054 bp Neighborhood of RT #1 [1, 2054] Tra5 RVT-GII GIIM Feature: gene Location: 1-264 bp Feature: domain Description: Tra5 Location: 4-247 bp Feature: domain Description: Tra5 Location: 4-2 47 bp Feature: gene Location: 277-1080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-1072 bp Feature: gene Location: 1133-1459 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1385 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1385 bp Feature: gene Location: 1812-2054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: UIPK01000165.1 Shigella flexneri strain 4028STDY6274955 genome assembly, contig: ERS1017584SCcontig000165, whole genome shotgun sequence (5966 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)