myRT

myRT report for GCA_900486535.1_18787_4_76

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Seq: UDVW01000033.1 Shigella flexneri strain 4028STDY6274989 genome assembly, contig: ERS1017641SCcontig000033, whole genome shotgun sequence (38921 bp)
Overview 1 RT 1: 1575-8991 bp Neighborhood of RT #1 [1575, 8993] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1575-1703 bp Feature: gene Location: 1793-2032 bp Feature: domain Description: PHA02517 Location: 1796-1967 bp Feature: domain Description: PHA0251 7 Location: 1 796-1 967 bp Feature: gene Location: 2624-4147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3629 bp Feature: domain Description: GIIM Note: maturase Location: 3704-3902 bp Feature: domain Description: GIIM Note: maturase Location: 3704-3902 bp Feature: gene Location: 4324-4710 bp Feature: domain Description: PHA02517 Location: 4327-4708 bp Feature: domain Description: PHA0251 7 Location: 4327-4708 bp Feature: gene Location: 4875-8993 bp Feature: domain Description: ESPR Location: 4878-4947 bp Feature: domain Description: ESPR Location: 4878-4947 bp Feature: domain Description: Peptidase_S6 Location: 5028-7200 bp Feature: domain Description: Peptidase_S6 Location: 5028-7200 bp Feature: domain Description: autotrans_barl Location: 7764-8991 bp Feature: domain Description: autotrans_barl Location: 7764-8991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDVW01000165.1 Shigella flexneri strain 4028STDY6274989 genome assembly, contig: ERS1017641SCcontig000165, whole genome shotgun sequence (5961 bp)
Overview 1 RT 1: 3206-5859 bp Neighborhood of RT #1 [3206, 5859] COG3547 RVT-GII GIIM Feature: gene Location: 3206-3691 bp Feature: domain Description: COG3547 Location: 3224-3677 bp Feature: domain Description: COG3547 Location: 32 2 4-3677 bp Feature: gene Location: 3787-3954 bp Feature: gene Location: 3980-5197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-482 0 bp Feature: domain Description: GIIM Note: maturase Location: 4898-5120 bp Feature: domain Description: GIIM Note: maturase Location: 4898-512 0 bp Feature: gene Location: 5208-5591 bp Feature: gene Location: 5665-5859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVW01000173.1 Shigella flexneri strain 4028STDY6274989 genome assembly, contig: ERS1017641SCcontig000173, whole genome shotgun sequence (5622 bp)
Overview 1 RT 1: 324-3459 bp Neighborhood of RT #1 [324, 3459] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 324-1073 bp Feature: domain Description: PAP2_acid_phosphatase Location: 399-1053 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3 99-1053 bp Feature: gene Location: 1469-1669 bp Feature: domain Description: Tra5 Location: 1478-1652 bp Feature: domain Description: Tra5 Location: 1478-1652 bp Feature: gene Location: 1682-2485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982-2477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982-2477 bp Feature: gene Location: 2538-2864 bp Feature: domain Description: GIIM Note: maturase Location: 2571-2790 bp Feature: domain Description: GIIM Note: maturase Location: 2571-2790 bp Feature: gene Location: 3217-3459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)