myRT

myRT report for GCA_900486545.1_18787_4_75

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Seq: UIPP01000079.1 Shigella flexneri strain 4028STDY6274988 genome assembly, contig: ERS1017639SCcontig000079, whole genome shotgun sequence (18832 bp)
Overview 1 RT 1: 16182-18803 bp Neighborhood of RT #1 [16182, 18829] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 16182-16667 bp Feature: domain Description: COG3547 Location: 16200-16653 bp Feature: domain Description: COG3547 Location: 1 6200-1 6653 bp Feature: gene Location: 16763-16930 bp Feature: gene Location: 16956-18173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17142-17796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 42-1 7796 bp Feature: domain Description: GIIM Note: maturase Location: 17874-18096 bp Feature: domain Description: GIIM Note: maturase Location: 1 7874-1 8096 bp Feature: gene Location: 18184-18567 bp Feature: gene Location: 18650-18829 bp Feature: domain Description: DDE_Tnp_IS66 Location: 18653-18803 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 8653-1 8803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UIPP01000117.1 Shigella flexneri strain 4028STDY6274988 genome assembly, contig: ERS1017639SCcontig000117, whole genome shotgun sequence (10951 bp)
Overview 1 RT 1: 317-3452 bp 2 RT 2: 5887-9092 bp Neighborhood of RT #1 [317, 3452] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Neighborhood of RT #2 [5887, 9157] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 317-1066 bp Feature: domain Description: PAP2_acid_phosphatase Location: 392-1046 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 392 -1046 bp Feature: gene Location: 1462-1662 bp Feature: domain Description: Tra5 Location: 1471-1645 bp Feature: domain Description: Tra5 Location: 1471-1645 bp Feature: gene Location: 1675-2478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2 470 bp Feature: gene Location: 2531-2857 bp Feature: domain Description: GIIM Note: maturase Location: 2564-2783 bp Feature: domain Description: GIIM Note: maturase Location: 2 564-2 783 bp Feature: gene Location: 3210-3452 bp Feature: gene Location: 5887-6240 bp Feature: domain Description: PHA02517 Location: 5947-6094 bp Feature: domain Description: PHA02 517 Location: 5947-6094 bp Feature: gene Location: 6520-6648 bp Feature: gene Location: 6761-8284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7034-7766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7034-7766 bp Feature: domain Description: GIIM Note: maturase Location: 7841-8039 bp Feature: domain Description: GIIM Note: maturase Location: 7841-8039 bp Feature: gene Location: 8238-8663 bp Feature: gene Location: 8876-9157 bp Feature: domain Description: PHA02517 Location: 8882-9092 bp Feature: domain Description: PHA02 517 Location: 8882 -9092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), PHA02517 (putative transposase OrfB; Reviewed)