myRT

myRT report for GCA_900486555.1_18787_4_79

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Seq: UDVY01000085.1 Shigella flexneri strain 4028STDY6274992 genome assembly, contig: ERS1017647SCcontig000085, whole genome shotgun sequence (15438 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-1 57 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1 500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1 578-1 800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-21 1 6 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 21 84-2637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVY01000110.1 Shigella flexneri strain 4028STDY6274992 genome assembly, contig: ERS1017647SCcontig000110, whole genome shotgun sequence (11546 bp)
Overview 1 RT 1: 3220-10636 bp Neighborhood of RT #1 [3220, 10638] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3220-3348 bp Feature: gene Location: 3438-3677 bp Feature: domain Description: PHA02517 Location: 3441-3612 bp Feature: domain Description: PHA02 517 Location: 3441-3612 bp Feature: gene Location: 4269-5792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4542-5274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4542 -52 74 bp Feature: domain Description: GIIM Note: maturase Location: 5349-5547 bp Feature: domain Description: GIIM Note: maturase Location: 5349-5547 bp Feature: gene Location: 5969-6355 bp Feature: domain Description: PHA02517 Location: 5972-6353 bp Feature: domain Description: PHA02 517 Location: 5972 -6353 bp Feature: gene Location: 6520-10638 bp Feature: domain Description: ESPR Location: 6523-6592 bp Feature: domain Description: ESPR Location: 652 3-6592 bp Feature: domain Description: Peptidase_S6 Location: 6673-8845 bp Feature: domain Description: Peptidase_S6 Location: 6673-8845 bp Feature: domain Description: autotrans_barl Location: 9409-10636 bp Feature: domain Description: autotrans_barl Location: 9409-10636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDVY01000164.1 Shigella flexneri strain 4028STDY6274992 genome assembly, contig: ERS1017647SCcontig000164, whole genome shotgun sequence (6258 bp)
Overview 1 RT 1: 977-4112 bp Neighborhood of RT #1 [977, 4112] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 977-1726 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1052-1706 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1052-1706 bp Feature: gene Location: 2122-2322 bp Feature: domain Description: Tra5 Location: 2131-2305 bp Feature: domain Description: Tra5 Location: 213 1-23 05 bp Feature: gene Location: 2335-3138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2635-3130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 5-3 13 0 bp Feature: gene Location: 3191-3517 bp Feature: domain Description: GIIM Note: maturase Location: 3224-3443 bp Feature: domain Description: GIIM Note: maturase Location: 3 224-3 443 bp Feature: gene Location: 3870-4112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)