myRT

myRT report for GCA_900486565.1_18787_4_49

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Seq: UDVX01000032.1 Shigella flexneri strain 4028STDY6274962 genome assembly, contig: ERS1017591SCcontig000032, whole genome shotgun sequence (39232 bp)
Overview 1 RT 1: 3260-10676 bp Neighborhood of RT #1 [3260, 10678] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3260-3388 bp Feature: gene Location: 3478-3717 bp Feature: domain Description: PHA02517 Location: 3481-3652 bp Feature: domain Description: PHA0251 7 Location: 3481 -3652 bp Feature: gene Location: 4309-5832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582-5314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582-531 4 bp Feature: domain Description: GIIM Note: maturase Location: 5389-5587 bp Feature: domain Description: GIIM Note: maturase Location: 5389-5587 bp Feature: gene Location: 6009-6395 bp Feature: domain Description: PHA02517 Location: 6012-6393 bp Feature: domain Description: PHA0251 7 Location: 601 2-6393 bp Feature: gene Location: 6560-10678 bp Feature: domain Description: ESPR Location: 6563-6632 bp Feature: domain Description: ESPR Location: 6563-6632 bp Feature: domain Description: Peptidase_S6 Location: 6713-8885 bp Feature: domain Description: Peptidase_S6 Location: 671 3-8885 bp Feature: domain Description: autotrans_barl Location: 9449-10676 bp Feature: domain Description: autotrans_barl Location: 9449-1 0676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDVX01000167.1 Shigella flexneri strain 4028STDY6274962 genome assembly, contig: ERS1017591SCcontig000167, whole genome shotgun sequence (5960 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVX01000173.1 Shigella flexneri strain 4028STDY6274962 genome assembly, contig: ERS1017591SCcontig000173, whole genome shotgun sequence (5646 bp)
Overview 1 RT 1: 2596-5297 bp Neighborhood of RT #1 [2596, 5317] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2596-2751 bp Feature: gene Location: 2777-3148 bp Feature: domain Description: GIIM Note: maturase Location: 2855-3074 bp Feature: domain Description: GIIM Note: maturase Location: 2855-3 074 bp Feature: gene Location: 3156-3959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3456-3951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 456-3 951 bp Feature: gene Location: 3972-4172 bp Feature: domain Description: Tra5 Location: 3981-4155 bp Feature: domain Description: Tra5 Location: 3 981-4155 bp Feature: gene Location: 4568-5317 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4643-5297 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4643 -5297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)