myRT

myRT report for GCA_900486585.1_18787_4_71

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Seq: UDWB01000171.1 Shigella flexneri strain 4028STDY6274984 genome assembly, contig: ERS1017631SCcontig000171, whole genome shotgun sequence (5639 bp)
Overview 1 RT 1: 331-3466 bp Neighborhood of RT #1 [331, 3466] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 331-1080 bp Feature: domain Description: PAP2_acid_phosphatase Location: 406-1060 bp Feature: domain Description: PAP2_acid_phosphatase Location: 406-1 060 bp Feature: gene Location: 1476-1676 bp Feature: domain Description: Tra5 Location: 1485-1659 bp Feature: domain Description: Tra5 Location: 1 485-1 659 bp Feature: gene Location: 1689-2492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1989-2484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 989-2484 bp Feature: gene Location: 2545-2871 bp Feature: domain Description: GIIM Note: maturase Location: 2578-2797 bp Feature: domain Description: GIIM Note: maturase Location: 2578-2797 bp Feature: gene Location: 3224-3466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDWB01000173.1 Shigella flexneri strain 4028STDY6274984 genome assembly, contig: ERS1017631SCcontig000173, whole genome shotgun sequence (5492 bp)
Overview 1 RT 1: 1269-5126 bp Neighborhood of RT #1 [1269, 5128] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1269-1595 bp Feature: domain Description: InsE Location: 1272-1593 bp Feature: domain Description: InsE Location: 12 72 -1593 bp Feature: gene Location: 1835-2074 bp Feature: domain Description: PHA02517 Location: 1838-2009 bp Feature: domain Description: PHA02 517 Location: 1838-2 009 bp Feature: gene Location: 2666-4189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2939-3671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 939-3671 bp Feature: domain Description: GIIM Note: maturase Location: 3746-3944 bp Feature: domain Description: GIIM Note: maturase Location: 3746-3944 bp Feature: gene Location: 4481-5128 bp Feature: domain Description: PHA02517 Location: 4484-5126 bp Feature: domain Description: PHA02 517 Location: 4484-512 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDWB01000153.1 Shigella flexneri strain 4028STDY6274984 genome assembly, contig: ERS1017631SCcontig000153, whole genome shotgun sequence (7027 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)