myRT

myRT report for GCA_900486595.1_18787_4_28

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Seq: UDWM01000014.1 Shigella flexneri strain 4028STDY6274941 genome assembly, contig: ERS1017570SCcontig000014, whole genome shotgun sequence (63334 bp)
Overview 1 RT 1: 3239-10655 bp Neighborhood of RT #1 [3239, 10657] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3239-3367 bp Feature: gene Location: 3457-3696 bp Feature: domain Description: PHA02517 Location: 3460-3631 bp Feature: domain Description: PHA0251 7 Location: 3460-3631 bp Feature: gene Location: 4288-5811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561 -5293 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: gene Location: 5988-6374 bp Feature: domain Description: PHA02517 Location: 5991-6372 bp Feature: domain Description: PHA0251 7 Location: 5991 -6372 bp Feature: gene Location: 6539-10657 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: ESPR Location: 6542-661 1 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Feature: domain Description: autotrans_barl Location: 9428-1 0655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDWM01000153.1 Shigella flexneri strain 4028STDY6274941 genome assembly, contig: ERS1017570SCcontig000153, whole genome shotgun sequence (6289 bp)
Overview 1 RT 1: 973-4108 bp Neighborhood of RT #1 [973, 4108] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 973-1722 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1048-1702 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1048-1702 bp Feature: gene Location: 2118-2318 bp Feature: domain Description: Tra5 Location: 2127-2301 bp Feature: domain Description: Tra5 Location: 2 12 7-2 301 bp Feature: gene Location: 2331-3134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631-3126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 631-312 6 bp Feature: gene Location: 3187-3513 bp Feature: domain Description: GIIM Note: maturase Location: 3220-3439 bp Feature: domain Description: GIIM Note: maturase Location: 32 2 0-3439 bp Feature: gene Location: 3866-4108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDWM01000162.1 Shigella flexneri strain 4028STDY6274941 genome assembly, contig: ERS1017570SCcontig000162, whole genome shotgun sequence (5887 bp)
Overview 1 RT 1: 3237-5858 bp Neighborhood of RT #1 [3237, 5884] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3237-3722 bp Feature: domain Description: COG3547 Location: 3255-3708 bp Feature: domain Description: COG3 547 Location: 3 255-3 708 bp Feature: gene Location: 3818-3985 bp Feature: gene Location: 4011-5228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4197-4851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4197-4851 bp Feature: domain Description: GIIM Note: maturase Location: 4929-5151 bp Feature: domain Description: GIIM Note: maturase Location: 4929-5151 bp Feature: gene Location: 5239-5622 bp Feature: gene Location: 5705-5884 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5708-5858 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5708-5858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)