myRT

myRT report for GCA_900486605.1_18787_4_80

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Seq: UDWE01000152.1 Shigella flexneri strain 4028STDY6274993 genome assembly, contig: ERS1017649SCcontig000152, whole genome shotgun sequence (6560 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-1 57 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1 500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1 578-1 800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-21 1 6 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 21 84-2637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWE01000157.1 Shigella flexneri strain 4028STDY6274993 genome assembly, contig: ERS1017649SCcontig000157, whole genome shotgun sequence (6309 bp)
Overview 1 RT 1: 993-4128 bp Neighborhood of RT #1 [993, 4128] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 993-1742 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1068-1722 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1068-172 2 bp Feature: gene Location: 2138-2338 bp Feature: domain Description: Tra5 Location: 2147-2321 bp Feature: domain Description: Tra5 Location: 2 147-2 32 1 bp Feature: gene Location: 2351-3154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2651-3146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 651-3146 bp Feature: gene Location: 3207-3533 bp Feature: domain Description: GIIM Note: maturase Location: 3240-3459 bp Feature: domain Description: GIIM Note: maturase Location: 32 40-3459 bp Feature: gene Location: 3886-4128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDWE01000090.1 Shigella flexneri strain 4028STDY6274993 genome assembly, contig: ERS1017649SCcontig000090, whole genome shotgun sequence (13395 bp)
Overview 1 RT 1: 10259-13392 bp Neighborhood of RT #1 [10259, 13392] Inovirus_Gp2 PHA02517 RVT-GII GIIM Feature: gene Location: 10259-10600 bp Feature: domain Description: Inovirus_Gp2 Location: 10328-10592 bp Feature: domain Description: Inovirus_Gp2 Location: 103 28-10592 bp Feature: gene Location: 10640-11086 bp Feature: domain Description: PHA02517 Location: 10643-11084 bp Feature: domain Description: PHA02517 Location: 10643 -11084 bp Feature: gene Location: 11216-12739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11489-12221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11489-12221 bp Feature: domain Description: GIIM Note: maturase Location: 12296-12494 bp Feature: domain Description: GIIM Note: maturase Location: 12296-12494 bp Feature: gene Location: 13033-13392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)